View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18360_high_7 (Length: 399)
Name: NF18360_high_7
Description: NF18360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18360_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 36610941 - 36610557
Alignment:
| Q |
1 |
ttttgtgttgtgctctctctgttgtaatctagaaatagtttgtatggtaagtttgtgattgtttgattccttttcatctaagtttttgattgttttactt |
100 |
Q |
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| T |
36610941 |
ttttgtgttgtgctctctctgttgtaatctagaaatagtttgtatggtaagtttgtgattgtttgattccttttcatctaagtttttgattgttttactt |
36610842 |
T |
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| Q |
101 |
ttattgtagggttgctatgtttgcattgttactggatactgtgaaggtggagacatgtgagtcttcggataatacctgtactaacgcagtaccatgtaaa |
200 |
Q |
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| T |
36610841 |
ttattgtagggttgctatgtttgcattgttactggatactgtgaaggtggagacatgtgagtcttcggataatacctgtactaacgcagtaccatgtaaa |
36610742 |
T |
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| Q |
201 |
attttatgagcccaaaaactcaattgtttaaaattctttatgttcattttctcttcaaatcttttcagagcagcattgatgaaaaaatcgaatggggctt |
300 |
Q |
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| T |
36610741 |
attttatgagcccaaaaactcaattgtttaaaattctttatgttcgttttctcttcaaatcttttcagagcagcattgatgaaaaaatcgaatggggctt |
36610642 |
T |
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| Q |
301 |
actttcctgaagaggtattcttgtttatactttgactttcttaaattttgtatatttgttaaatattttgcttgctcatgttgat |
385 |
Q |
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| T |
36610641 |
actttcctgaagaggtattcttgtttatactttgactttcttaaattttgtatatttgttaaatattttgcttgctcatgttgat |
36610557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 18641861 - 18641921
Alignment:
| Q |
104 |
ttgtagggttgctatgtttgcattgttactggatactgtgaaggtggagacatgtgagtct |
164 |
Q |
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| T |
18641861 |
ttgtagggttgctatgtctgcattgtcactggatactgtgaaggtggagacatgtgagtct |
18641921 |
T |
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