View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18360_high_9 (Length: 314)
Name: NF18360_high_9
Description: NF18360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18360_high_9 |
 | |
|
| [»] scaffold0014 (2 HSPs) |
| | |
|
| [»] scaffold1284 (1 HSPs) |
| | |
|
| [»] scaffold0318 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 3220171 - 3220464
Alignment:
| Q |
1 |
taactcctctgctttggtctttttaagtagtaatcaaggtcgatccctcaaataagcaagtcctgtcctaagtgagactattgccagctcagtcagtcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3220171 |
taactcctctgctttggtctttttaagtagtaatcaaggtcgatccctcaaataagcaagtcctgtcctaagtgagactattgccagctcagtcagtcac |
3220270 |
T |
|
| Q |
101 |
agtattgacaagtgatttgttaaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3220271 |
agtattgacaagtgatttgttaaaagct--aaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttc |
3220368 |
T |
|
| Q |
201 |
ttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctg |
296 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3220369 |
ttcgcgaaacaaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctg |
3220464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 122 - 296
Target Start/End: Original strand, 12504720 - 12504894
Alignment:
| Q |
122 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga |
221 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
12504720 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga |
12504819 |
T |
|
| Q |
222 |
aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctg |
296 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||| |
|
|
| T |
12504820 |
aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctg |
12504894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 122 - 296
Target Start/End: Complemental strand, 14681206 - 14681032
Alignment:
| Q |
122 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga |
221 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
14681206 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga |
14681107 |
T |
|
| Q |
222 |
aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctg |
296 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||| |
|
|
| T |
14681106 |
aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctg |
14681032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 15985417 - 15985303
Alignment:
| Q |
1 |
taactcctctgctttggtctttttaagtagtaatcaa-ggtcgatccctcaaataagcaagtcctgtcctaagtgagactattgccagctcagtcagtca |
99 |
Q |
| |
|
||||||||||| |||| || || ||||||||||||| ||| ||||||||||||||||||||| ||||||||||| ||| ||||||||| |||| || |
|
|
| T |
15985417 |
taactcctctgatttgaactcttgaagtagtaatcaaaggttgatccctcaaataagcaagtcttgtcctaagtgtgacgattgccagc----tcagcca |
15985322 |
T |
|
| Q |
100 |
cagtattgacaagtgattt |
118 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
15985321 |
cagtattgacaagtgattt |
15985303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 122 - 296
Target Start/End: Original strand, 143719 - 143893
Alignment:
| Q |
122 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga |
221 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
143719 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga |
143818 |
T |
|
| Q |
222 |
aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctg |
296 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||| |||| ||||||| |||||| |||| |||| |
|
|
| T |
143819 |
aatttgtgatttcacctgagattccatcggtttatctcacagatgcagcgtgcgaagctggaacggagaatcctg |
143893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 122 - 296
Target Start/End: Original strand, 173513 - 173687
Alignment:
| Q |
122 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga |
221 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
173513 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga |
173612 |
T |
|
| Q |
222 |
aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctg |
296 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||| |
|
|
| T |
173613 |
aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctg |
173687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 8e-61; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 122 - 296
Target Start/End: Original strand, 44197897 - 44198071
Alignment:
| Q |
122 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga |
221 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
44197897 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga |
44197996 |
T |
|
| Q |
222 |
aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctg |
296 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||| |
|
|
| T |
44197997 |
aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctg |
44198071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 127 - 291
Target Start/End: Original strand, 20793444 - 20793608
Alignment:
| Q |
127 |
cttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaattt |
226 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||| |
|
|
| T |
20793444 |
cttcaaacaagtagtttctgttaagcttgatgatacaaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaattt |
20793543 |
T |
|
| Q |
227 |
gtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaa |
291 |
Q |
| |
|
|||||||||||| | ||||||| ||||||||||||||||| |||||||||||| |||||| |||| |
|
|
| T |
20793544 |
gtgatttcacctgatattccacaggtttatctcacagatgcagcgcgcgaagctggaacggagaa |
20793608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 122 - 286
Target Start/End: Complemental strand, 23929254 - 23929090
Alignment:
| Q |
122 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga |
221 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| | ||||| |
|
|
| T |
23929254 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagttgaaggtgttcttcgcggaacgaagatggtga |
23929155 |
T |
|
| Q |
222 |
aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacg |
286 |
Q |
| |
|
||||||||||||||||| | ||||||| | ||||||||||||||| |||||||||||| |||||| |
|
|
| T |
23929154 |
aatttgtgatttcacctgatattccactgatttatctcacagatgcagcgcgcgaagctggaacg |
23929090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 119
Target Start/End: Original strand, 23729294 - 23729406
Alignment:
| Q |
3 |
actcctctgctttggtctttttaagtagtaatcaaggtcgatccctcaaataagcaagtcctgtcctaagtgagactattgccagctcagtcagtcacag |
102 |
Q |
| |
|
|||||| ||| ||||||| || ||| |||| ||| || |||| ||||||||||||||| |||||||||||| ||||||||||||||| | | ||||| |
|
|
| T |
23729294 |
actcctatgccttggtctcttacagtggtaaccaatgttgatctctcaaataagcaagttctgtcctaagtgtgactattgccagctc-gac---cacag |
23729389 |
T |
|
| Q |
103 |
tattgacaagtgatttg |
119 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
23729390 |
tattgacaagtgatttg |
23729406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 8e-61; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 122 - 296
Target Start/End: Complemental strand, 48513721 - 48513547
Alignment:
| Q |
122 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga |
221 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
48513721 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga |
48513622 |
T |
|
| Q |
222 |
aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctg |
296 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||| |
|
|
| T |
48513621 |
aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctg |
48513547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 122 - 296
Target Start/End: Complemental strand, 48728163 - 48727989
Alignment:
| Q |
122 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga |
221 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
48728163 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaaacaacaagtcgaaggtgttcttcgcggaacgaagatggtga |
48728064 |
T |
|
| Q |
222 |
aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctg |
296 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| |||| |||||| |||| |||| |
|
|
| T |
48728063 |
aatttgtgatttcacctgagattccaccggtttatctcacacatgcagcgcgcaaagctggaacggagaatcctg |
48727989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 122 - 296
Target Start/End: Complemental strand, 3718514 - 3718341
Alignment:
| Q |
122 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga |
221 |
Q |
| |
|
|||| |||||||| | |||||| ||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| |||||| | ||||| |
|
|
| T |
3718514 |
aaaaccttcaaacaactagtttctgtcaagcttgatgatacaaactacctttaatggaagcaacaagtcgaaggtgttct-cgcggaacgaagatggtga |
3718416 |
T |
|
| Q |
222 |
aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctg |
296 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| ||||||||||| |||| |
|
|
| T |
3718415 |
aatttgtgatttcacctgagattccaccggtttatctcacagatgcagcacgcgaagctggaacgaagaatcctg |
3718341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 155 - 285
Target Start/End: Original strand, 42105178 - 42105308
Alignment:
| Q |
155 |
gatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggttt |
254 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||| | |||||| | |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42105178 |
gatgatacgaactaccttcaatggaagcaacaagttgaaggtgttcttcgtggaacgaagatggtgaaatttgtgatttcacctgagattccaccggttt |
42105277 |
T |
|
| Q |
255 |
atctcacagatgaagcgcgcgaagcaggaac |
285 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| |
|
|
| T |
42105278 |
atctcacagatgcagcgcgcgaagctggaac |
42105308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 122 - 296
Target Start/End: Original strand, 29651774 - 29651948
Alignment:
| Q |
122 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga |
221 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
29651774 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga |
29651873 |
T |
|
| Q |
222 |
aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctg |
296 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||| |
|
|
| T |
29651874 |
aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctg |
29651948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 8e-61; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 122 - 296
Target Start/End: Original strand, 36662526 - 36662700
Alignment:
| Q |
122 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga |
221 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
36662526 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga |
36662625 |
T |
|
| Q |
222 |
aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctg |
296 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||| |
|
|
| T |
36662626 |
aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctg |
36662700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 122 - 296
Target Start/End: Complemental strand, 36679252 - 36679078
Alignment:
| Q |
122 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga |
221 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
36679252 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga |
36679153 |
T |
|
| Q |
222 |
aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctg |
296 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||| |
|
|
| T |
36679152 |
aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctg |
36679078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 122 - 297
Target Start/End: Complemental strand, 23204100 - 23203925
Alignment:
| Q |
122 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga |
221 |
Q |
| |
|
|||| |||||||| |||| ||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
23204100 |
aaaaccttcaaacaagtactttctgttaagcttgattatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga |
23204001 |
T |
|
| Q |
222 |
aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgt |
297 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| | ||| ||| || | |||||||||| |||| ||||| |
|
|
| T |
23204000 |
aatttgtgatttcacctgagattccaccggtttatctcataaatgcagcacgtggagcaggaacggagaatcctgt |
23203925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 173 - 296
Target Start/End: Original strand, 43560199 - 43560321
Alignment:
| Q |
173 |
caatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgc |
272 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| | |
|
|
| T |
43560199 |
caatggaagcaacaa-tcgaaggtgttcttcgcggaacgaagatggtgaaatttgcgatttcacctgagattccaccggtttatctcacagatgcagcac |
43560297 |
T |
|
| Q |
273 |
gcgaagcaggaacgaagaaacctg |
296 |
Q |
| |
|
||||||||||||| |||| |||| |
|
|
| T |
43560298 |
acgaagcaggaacggagaatcctg |
43560321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 8e-61; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 122 - 296
Target Start/End: Complemental strand, 38327980 - 38327806
Alignment:
| Q |
122 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga |
221 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
38327980 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga |
38327881 |
T |
|
| Q |
222 |
aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctg |
296 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||| |
|
|
| T |
38327880 |
aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctg |
38327806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 122 - 291
Target Start/End: Original strand, 55488644 - 55488813
Alignment:
| Q |
122 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga |
221 |
Q |
| |
|
|||| |||||||| |||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
55488644 |
aaaaccttcaaacaagtagtttctattaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga |
55488743 |
T |
|
| Q |
222 |
aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaa |
291 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| |||||| |||| |
|
|
| T |
55488744 |
aatttgtgatttcacctgagattccaccggtttatctcacagatgcagcacgcgaagctggaacggagaa |
55488813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 122 - 296
Target Start/End: Original strand, 46073352 - 46073524
Alignment:
| Q |
122 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga |
221 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | | ||| |
|
|
| T |
46073352 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaaacaacaagtcgaaggtgttcttcgcggaacgaagatgttga |
46073451 |
T |
|
| Q |
222 |
aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctg |
296 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| |||||| |||| |||| |
|
|
| T |
46073452 |
aatttgtgatttcacctgagattcca--ggtttatctcacagatgcagcgcgcgaagctggaacggagaatcctg |
46073524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 8e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 122 - 296
Target Start/End: Complemental strand, 52609299 - 52609125
Alignment:
| Q |
122 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga |
221 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
52609299 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga |
52609200 |
T |
|
| Q |
222 |
aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctg |
296 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||| |
|
|
| T |
52609199 |
aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctg |
52609125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 127 - 296
Target Start/End: Original strand, 29886958 - 29887126
Alignment:
| Q |
127 |
cttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaattt |
226 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | |||||||||| |
|
|
| T |
29886958 |
cttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaaacaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaattt |
29887057 |
T |
|
| Q |
227 |
gtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctg |
296 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |||| |||| |
|
|
| T |
29887058 |
gtgatttcgcctgagattccaccggtttatctcaca-atgcagcgcgcgaagcaggaacggagaatcctg |
29887126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 127 - 296
Target Start/End: Original strand, 52887707 - 52887880
Alignment:
| Q |
127 |
cttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaattt |
226 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| | |||||||||| |
|
|
| T |
52887707 |
cttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaatgaagatggtgaaattt |
52887806 |
T |
|
| Q |
227 |
gtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcg----aagcaggaacgaagaaacctg |
296 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| || |||||||| ||||||||||| |||| |||| |
|
|
| T |
52887807 |
gtgatttcacctgagattccaccggtttatctcacagttgcagcgcgcgcacgaagcaggaacggagaatcctg |
52887880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1284 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold1284
Description:
Target: scaffold1284; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 173 - 296
Target Start/End: Original strand, 143 - 265
Alignment:
| Q |
173 |
caatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgc |
272 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| | |
|
|
| T |
143 |
caatggaagcaacaa-tcgaaggtgttcttcgcggaacgaagatggtgaaatttgcgatttcacctgagattccaccggtttatctcacagatgcagcac |
241 |
T |
|
| Q |
273 |
gcgaagcaggaacgaagaaacctg |
296 |
Q |
| |
|
||||||||||||| |||| |||| |
|
|
| T |
242 |
acgaagcaggaacggagaatcctg |
265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0318 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0318
Description:
Target: scaffold0318; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 20093 - 19955
Alignment:
| Q |
122 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga |
221 |
Q |
| |
|
|||| |||||||| ||||||| ||| |||||| ||||| |||||||| |||||||||| ||||| |||||||| | || | || |||| ||||| |
|
|
| T |
20093 |
aaaaccttcaaacaggtagtttttgtgaagcttcatgattcaaactacctctaatggaagcagcaagtagaaggtgtgttgcgaggaagaaaaatggtga |
19994 |
T |
|
| Q |
222 |
aatttgtgatttcacctcagattccaccggtttatctca |
260 |
Q |
| |
|
||||| || |||| || || ||||||||||||||||||| |
|
|
| T |
19993 |
aatttatggtttctccacaaattccaccggtttatctca |
19955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 261
Target Start/End: Complemental strand, 56288780 - 56288686
Alignment:
| Q |
167 |
taccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcac |
261 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||| | |||| ||||| | ||||||| ||| |||| || |||||||||||||| |||||||| |
|
|
| T |
56288780 |
taccttcaatggaaacaacaggtcgaaggagttttgcgcggtacgaagatggtgaaacatgtcgtttcgccgcagattccaccggtgtatctcac |
56288686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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