View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18360_low_1 (Length: 679)
Name: NF18360_low_1
Description: NF18360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18360_low_1 |
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| [»] scaffold0100 (2 HSPs) |
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Alignment Details
Target: scaffold0100 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 18 - 551
Target Start/End: Original strand, 49469 - 50011
Alignment:
| Q |
18 |
aaaaggatgttagtgt---tttttctttatacctattttagatcagggaaagtagtataaactgtagtagtatataaagtaacaacttattatataattc |
114 |
Q |
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| T |
49469 |
aaaaggatgttagtgtgtttttttctttatacctattttagatcagggaaagtagaataaactatagtagtatataaagtaacaacttattatataattc |
49568 |
T |
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| Q |
115 |
actatgtttacacgattaaatactgaatttattaaactatataaaattcaaactgaaaaagtaattaatgaataataaataaagattgatatataccgaa |
214 |
Q |
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| T |
49569 |
actatgtttacacgattaaatactgaatttattaaactatataaaattcaaactgaaaaagtaattaatgaacaataaataaagattgatatataccgaa |
49668 |
T |
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| Q |
215 |
taaacaaagggatcatggcgccctcctgagcctgttcttttcacaacatccctcctaagtaacctgcacataattcattcataaacattattacaacatt |
314 |
Q |
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| T |
49669 |
taaacaaagggatcatggcgccctcctgagcctgttcttttcacaacatccctcctaagtaacctgcacataattcattcataaacattattacaacatt |
49768 |
T |
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| Q |
315 |
tttatacctatgaaatttaattaaacgtgacaactttcatgtcttagtcttatagttttattcaatcatattaaaatccaaagtaaattaaattagagta |
414 |
Q |
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| T |
49769 |
tttatacctatggaatttaattaaacgtgacaactctcatgtcttagtcttatagttttattcaatcatattaaaatccatagtaaattaaattagagta |
49868 |
T |
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| Q |
415 |
ttgtttggaataatcacaattcacaaaaccaaacgtgtacatccaagtatttgaatcatgatttcatg------taataatcaaattatcaaagtttcat |
508 |
Q |
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| T |
49869 |
ttgtttggaataatcacaattcacaaaaccaaacgtgtacatccaagtatttgaatcatgatttcatgtaataataataatcaaattatcaaagtttcct |
49968 |
T |
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| Q |
509 |
gtgatattgtgaagacattaatctatagtttgtatgtgcgtgc |
551 |
Q |
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| T |
49969 |
gtgatattgtgaagacattaatctatagtttgtatgtgcgtgc |
50011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 575 - 663
Target Start/End: Original strand, 50057 - 50145
Alignment:
| Q |
575 |
gagagagagtatcacattcggagagctttgctagtgtcagggctatcaccaagcatttcacggatcttcacttcagaagaccaaccacc |
663 |
Q |
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| T |
50057 |
gagagagagtatcacattcggagagctttgctagtgtcagggctatcaccaagcatttcacggatcttcacttcagaagaccaaccacc |
50145 |
T |
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