View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18360_low_13 (Length: 275)
Name: NF18360_low_13
Description: NF18360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18360_low_13 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 46223057 - 46222808
Alignment:
| Q |
16 |
ctcttctcttttttcaaatcaccctttctctttccttcatccattgattcccaccactccaatttcttcttcatcttacttttctctccctttccacttc |
115 |
Q |
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| T |
46223057 |
ctcttctcttttttcaaatcaccctttctctttccttcatccattgattcccaccactccaatttcttcttcatcttacttttctctccctttccacttc |
46222958 |
T |
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| Q |
116 |
cacccaccaaatcatcattctttgttctttcttccttcacctcttttccaatccaatccatcacataatccttcacacttccactcttcttcaatccaac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
46222957 |
cacccaccaaatcatcattctttgttctttcttccttcacctcttttccaatccaatccatcacataatccttcacacttccactcttcttcaatccacc |
46222858 |
T |
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| Q |
216 |
accaaccatctccctctcatattcctcaaagttagtattaacactctctg |
265 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46222857 |
accaaccatctccctctcatattcctcaaagctagtattaacactctctg |
46222808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 191
Target Start/End: Original strand, 227089 - 227119
Alignment:
| Q |
161 |
ttccaatccaatccatcacataatccttcac |
191 |
Q |
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| T |
227089 |
ttccaatccaatccatcacataatccttcac |
227119 |
T |
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