View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18360_low_16 (Length: 249)
Name: NF18360_low_16
Description: NF18360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18360_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 86 - 239
Target Start/End: Original strand, 51108538 - 51108691
Alignment:
| Q |
86 |
gggatgaaattatcaagacatatttaaggatggagataatataattaaagatgctacttcattgagttattgtattgttatatgcttaccatcatcttcc |
185 |
Q |
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| T |
51108538 |
gggatgaaattatcaagacatatttaaggatggagataatataattaaagatgctacttcattgagttattgtattgttatatgcttaccatcatcttcc |
51108637 |
T |
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| Q |
186 |
acgggcttgacatattcatcttttatttggtcggtcaactgtggctcctctgtg |
239 |
Q |
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| T |
51108638 |
acgggcttgacatattcatcttttatttggtcgttcaactgtggctcgtctgtg |
51108691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 51108453 - 51108486
Alignment:
| Q |
1 |
ttgcaaaaatagtatattagctcaagatacttgg |
34 |
Q |
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| T |
51108453 |
ttgcaaaaatagtatattagctcaagatatttgg |
51108486 |
T |
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