View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18360_low_17 (Length: 241)

Name: NF18360_low_17
Description: NF18360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18360_low_17
NF18360_low_17
[»] chr7 (2 HSPs)
chr7 (18-60)||(42062373-42062415)
chr7 (24-59)||(27923044-27923079)
[»] chr5 (3 HSPs)
chr5 (18-60)||(14136180-14136222)
chr5 (1-60)||(27513993-27514060)
chr5 (1-59)||(11781941-11782007)
[»] chr4 (4 HSPs)
chr4 (1-60)||(54454154-54454221)
chr4 (18-59)||(1606288-1606329)
chr4 (1-59)||(33748015-33748081)
chr4 (24-59)||(42057673-42057708)
[»] chr3 (2 HSPs)
chr3 (18-60)||(19647909-19647951)
chr3 (196-224)||(44355202-44355230)
[»] chr1 (3 HSPs)
chr1 (1-60)||(26733203-26733270)
chr1 (1-59)||(38863717-38863783)
chr1 (24-58)||(37285746-37285780)
[»] chr2 (3 HSPs)
chr2 (1-59)||(4106095-4106161)
chr2 (18-59)||(7000225-7000266)
chr2 (1-59)||(42481472-42481538)
[»] chr8 (1 HSPs)
chr8 (2-59)||(31664612-31664677)
[»] chr6 (2 HSPs)
chr6 (24-60)||(18058679-18058715)
chr6 (24-59)||(30452578-30452613)


Alignment Details
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 42062373 - 42062415
Alignment:
Q  18 ttaaataaaataagtaacatgaattaaataagtattcaattga 60  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  42062373 ttaaaaaaaataagtaacatgaattaaataagtattcaattga 42062415  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 27923079 - 27923044
Alignment:
Q  24 aaaataagtaacatgaattaaataagtattcaattg 59  Q
    ||||||||||||||||||||||||||||||||||||    
T  27923079 aaaataagtaacatgaattaaataagtattcaattg 27923044  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 14136222 - 14136180
Alignment:
Q  18 ttaaataaaataagtaacatgaattaaataagtattcaattga 60  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  14136222 ttaaaaaaaataagtaacatgaattaaataagtattcaattga 14136180  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 27514060 - 27513993
Alignment:
Q  1 ttttgaagggatatgaattaaat--------aaaataagtaacatgaattaaataagtattcaattga 60  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  27514060 ttttgaagggatatgaattaaatttcttaaaaaaataagtaacatgaattaaataagtattcaattga 27513993  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11782007 - 11781941
Alignment:
Q  1 ttttgaagggatatgaattaaat--------aaaataagtaacatgaattaaataagtattcaattg 59  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  11782007 ttttgaagggatatgaattaaatttcttaacaaaataagtaacatgaattaaataagtattcaattg 11781941  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 54454154 - 54454221
Alignment:
Q  1 ttttgaagggatatgaattaaat--------aaaataagtaacatgaattaaataagtattcaattga 60  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  54454154 ttttgaagggatatgaattaaatttcttaaaaaaataagtaacatgaattaaataagtattcaattga 54454221  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 1606288 - 1606329
Alignment:
Q  18 ttaaataaaataagtaacatgaattaaataagtattcaattg 59  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  1606288 ttaaaaaaaataagtaacatgaattaaataagtattcaattg 1606329  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 33748081 - 33748015
Alignment:
Q  1 ttttgaagggatatgaattaaat--------aaaataagtaacatgaattaaataagtattcaattg 59  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  33748081 ttttgaagggatatgaattaaatttcttaaaaaaataagtaacatgaattaaataagtattcaattg 33748015  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 42057708 - 42057673
Alignment:
Q  24 aaaataagtaacatgaattaaataagtattcaattg 59  Q
    ||||||||||||||||||||||||||||||||||||    
T  42057708 aaaataagtaacatgaattaaataagtattcaattg 42057673  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 19647909 - 19647951
Alignment:
Q  18 ttaaataaaataagtaacatgaattaaataagtattcaattga 60  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  19647909 ttaaaaaaaataagtaacatgaattaaataagtattcaattga 19647951  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 44355230 - 44355202
Alignment:
Q  196 atgcctagatagaggtgtaattggtttta 224  Q
    |||||||||||||||||||||||||||||    
T  44355230 atgcctagatagaggtgtaattggtttta 44355202  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 26733270 - 26733203
Alignment:
Q  1 ttttgaagggatatgaattaaat--------aaaataagtaacatgaattaaataagtattcaattga 60  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  26733270 ttttgaagggatatgaattaaatttcttaaaaaaataagtaacatgaattaaataagtattcaattga 26733203  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 38863717 - 38863783
Alignment:
Q  1 ttttgaagggatatgaattaaat--------aaaataagtaacatgaattaaataagtattcaattg 59  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  38863717 ttttgaagggatatgaattaaatttcttaaaaaaataagtaacatgaattaaataagtattcaattg 38863783  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 37285746 - 37285780
Alignment:
Q  24 aaaataagtaacatgaattaaataagtattcaatt 58  Q
    |||||||||||||||||||||||||||||||||||    
T  37285746 aaaataagtaacatgaattaaataagtattcaatt 37285780  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 4106095 - 4106161
Alignment:
Q  1 ttttgaagggatatgaattaaat--------aaaataagtaacatgaattaaataagtattcaattg 59  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  4106095 ttttgaagggatatgaattaaatttcttaaaaaaataagtaacatgaattaaataagtattcaattg 4106161  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 7000266 - 7000225
Alignment:
Q  18 ttaaataaaataagtaacatgaattaaataagtattcaattg 59  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  7000266 ttaaaaaaaataagtaacatgaattaaataagtattcaattg 7000225  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 42481472 - 42481538
Alignment:
Q  1 ttttgaagggatatgaattaaat--------aaaataagtaacatgaattaaataagtattcaattg 59  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  42481472 ttttgaagggatatgaattaaatttcttaaaaaaataagtaacatgaattaaataagtattcaattg 42481538  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 31664677 - 31664612
Alignment:
Q  2 tttgaagggatatgaattaaat--------aaaataagtaacatgaattaaataagtattcaattg 59  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  31664677 tttgaagggatatgaattaaatttcttaaaaaaataagtaacatgaattaaataagtattcaattg 31664612  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 18058679 - 18058715
Alignment:
Q  24 aaaataagtaacatgaattaaataagtattcaattga 60  Q
    |||||||||||||||||||||||||||||||||||||    
T  18058679 aaaataagtaacatgaattaaataagtattcaattga 18058715  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 30452613 - 30452578
Alignment:
Q  24 aaaataagtaacatgaattaaataagtattcaattg 59  Q
    ||||||||||||||||||||||||||||||||||||    
T  30452613 aaaataagtaacatgaattaaataagtattcaattg 30452578  T

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