View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18360_low_2 (Length: 605)
Name: NF18360_low_2
Description: NF18360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18360_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 458; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 15 - 599
Target Start/End: Original strand, 3219712 - 3220294
Alignment:
| Q |
15 |
ggctcatgggtgcgacacgacgaaaccccattttgcattgaagtttagagtagcactactgatagtggtcagatagcgctgcagtaaagctcatgtaaaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3219712 |
ggctcatgggtgcgacacgacgaaaccccattttgcattgaagtttagagtagcactactgatagtggtcagatagcgctgcagtaaagctcatgtaaaa |
3219811 |
T |
|
| Q |
115 |
aattctaaactttttgcaatatcatcatttccccccacttgcggctttccaatggctctttctgcaacctttccagggggactttctacaacttccagac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3219812 |
--ttctaaactttttgcaatatcatcatttccccccacttgcggctttccaatggctctttctgcaacctttccagggggactttctacaacttccagac |
3219909 |
T |
|
| Q |
215 |
tgccatcctcaccttgcggctttccagcggccctttctgcaacaaaattatatccgtgcatcagagctatttagtcaaggatattaagcagcgacaccct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3219910 |
tgccatcctcaccttgcggctttccagcggccctttctgcaacaaaattatatccgtgcatcagagctatttagtcaaggatattaagcagcgacaccct |
3220009 |
T |
|
| Q |
315 |
ttgcatgttgttttccttgtatcgactacctataaaatagtcatcgattcgtgatcagattttgggttctcctattttatccactttcaactttgcatgg |
414 |
Q |
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|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3220010 |
tttcatgttgttttccttgtatcgactacctataaaatattcatcgattcgtgatcagattttgggttctcctattttatccactttcaactttgcatgg |
3220109 |
T |
|
| Q |
415 |
tatatcttgtgtgtattagaaaaatcgttagttgtagatgtgcatcatatcttgtacctgtttacttctcttttttggtctttttaagtatttatctagg |
514 |
Q |
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||||||||||||||| | |||||| ||| || ||||||||||||||||||| || ||||| | ||| |||| ||||||||||||||||| | ||| ||| |
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| T |
3220110 |
tatatcttgtgtgtactggaaaaaccgtaagatgtagatgtgcatcatatcatgaacctgataactcctctgctttggtctttttaagtagtaatcaagg |
3220209 |
T |
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| Q |
515 |
atgatcccttaaataagctagtcctgtccaaagtgagactattgctagataaatcagtcacaatattgtaaagtgatttgttaaa |
599 |
Q |
| |
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||||||| |||||||| |||||||||| ||||||||||||||| || | | ||||||||| ||||| ||||||||||||||| |
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| T |
3220210 |
tcgatccctcaaataagcaagtcctgtcctaagtgagactattgccagctcagtcagtcacagtattgacaagtgatttgttaaa |
3220294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 216 - 559
Target Start/End: Complemental strand, 15985677 - 15985333
Alignment:
| Q |
216 |
gccatcctcaccttgcggctttccagcggccctttctgcaacaaaattatatccgtgcatcagagctatttagtcaaggatattaagcagcgacaccctt |
315 |
Q |
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||||||||||||||| ||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||||| | ||||| |
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| T |
15985677 |
gccatcctcaccttgtggctttccagcagccctttctacaacaaaatgctatccgtgcatcagagctatttagtcaaagatattgagcagcggcgccctt |
15985578 |
T |
|
| Q |
316 |
tgcatgttgttttccttgtatcgactacctataaaatagtcatcgattcgtgatcagattttgggttctcctattttatccactttcaactttgcatggt |
415 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| |||||||||| ||||| || ||| |||||||| |||| | ||||||||||||||||||||| |
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| T |
15985577 |
cgcatgttgttttccttgtatggactacctataaaatattcatcgattcatgatcggagtttaggttctccaatttgacccactttcaactttgcatggt |
15985478 |
T |
|
| Q |
416 |
atatcttgtgtgtattagaaaaatcgttagttgtagatgtgcatcatatcttgtacctgtttacttctcttttttggtctttttaagtatttatc-tagg |
514 |
Q |
| |
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||||||||||||| | |||||| | | || ||||||||||||||||||| || ||||| | ||| |||| |||| || || ||||| | ||| ||| |
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| T |
15985477 |
ctatcttgtgtgtactggaaaaaccatcagatgtagatgtgcatcatatcatgcacctgataactcctctgatttgaactcttgaagtagtaatcaaagg |
15985378 |
T |
|
| Q |
515 |
atgatcccttaaataagctagtcctgtccaaagtgagactattgc |
559 |
Q |
| |
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|||||||| |||||||| |||| ||||| ||||| ||| ||||| |
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| T |
15985377 |
ttgatccctcaaataagcaagtcttgtcctaagtgtgacgattgc |
15985333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 15985969 - 15985932
Alignment:
| Q |
37 |
aaaccccattttgcattgaagtttagagtagcactact |
74 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| |
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| T |
15985969 |
aaaccccattttgcattgaagtttagagtagcgctact |
15985932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 15985738 - 15985680
Alignment:
| Q |
132 |
aatatcatcatttccccccacttgcggctttccaatggctctttctgcaacctttccagg |
191 |
Q |
| |
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||||||||| |||||||| |||||||||||||| |||| |||||||||||||||| ||| |
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| T |
15985738 |
aatatcatcgtttccccct-cttgcggctttccattggccctttctgcaacctttcaagg |
15985680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 288 - 414
Target Start/End: Original strand, 23729106 - 23729232
Alignment:
| Q |
288 |
gtcaaggatattaagcagcgacaccctttgcatgttgttttccttgtatcgactacctataaaatagtcatcgattcgtgatcagattttgggttctcct |
387 |
Q |
| |
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|||||||| ||| |||||| | |||||| |||||||||| |||||| | | |||||| ||| || |||| ||||||||||||||||| ||||||||| |
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| T |
23729106 |
gtcaaggaaattgagcagcaatgcccttttcatgttgtttgccttgtgtgggttacctacaaagtactcattgattcgtgatcagatttagggttctccc |
23729205 |
T |
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| Q |
388 |
attttatccactttcaactttgcatgg |
414 |
Q |
| |
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| | | |||||||| ||||||||||| |
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| T |
23729206 |
actacacccactttccactttgcatgg |
23729232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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