View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18360_low_4 (Length: 510)
Name: NF18360_low_4
Description: NF18360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18360_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 10 - 491
Target Start/End: Complemental strand, 8185369 - 8184879
Alignment:
| Q |
10 |
ataatactaccaaagtgtacggagtgatttcttggcccaaaagttactgacttgtgccttgcacatcatatattct-----ccttgaattttaacttaaa |
104 |
Q |
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| T |
8185369 |
ataatactaccaaagtgtacggagtgatttcttggcccaaaagttactgacttgtaccctgcacatcatatattctattctccttgaattttaacttaaa |
8185270 |
T |
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| Q |
105 |
agctgtgaaattctcacatggttttgttcaatttgtagctatttctattcttagaaagtttttagtagtgaattggtctttgacccttttattcataagg |
204 |
Q |
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| T |
8185269 |
agctgtgaaattctcaca-------gttcaatttgtagctatttctattcttagaaagtttttagtagtgaattggtctttgacccttttattcataagg |
8185177 |
T |
|
| Q |
205 |
aaattcaaaagtaaaggatcaactttcatttgtatacaacttcttttgacaaaacttatttaaaagatagtacaatacata-----------taattatt |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
8185176 |
aaattcaaaagtaaaggatcaactttcatttgtatacaacttcttttgataaaacttatttaaaagatagtacaatacatactacatacatataattatt |
8185077 |
T |
|
| Q |
294 |
tcaatgtttttgtgatattttggacagaaacttatttctcaggtctgcatcatcatcaacctctccaaagtgattctctggaatccagtttccagtctta |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8185076 |
tcaatgtttttgtgatattttggacagaaacttatttctcaggtctgcatcatcatcaacctctccaaagtgattctctggaatccagtttccagtctta |
8184977 |
T |
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| Q |
394 |
ggatctctcatccaaaatatttttctctcttcattggccaccgatattgattcattcacattagtcttcaccacctccatgttggtttttgtcccttg |
491 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8184976 |
ggatctctcatccaaaatatttttctctcttcattggccaccgatattgattccttcacattagtcttcaccacctccatgttggtttttgtcccttg |
8184879 |
T |
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