View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18361_high_1 (Length: 851)
Name: NF18361_high_1
Description: NF18361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18361_high_1 |
 | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 58 - 387
Target Start/End: Complemental strand, 26756198 - 26755869
Alignment:
| Q |
58 |
aagcagagctatatgcaaagaagaagtaggcggaggggatcgtgacacttgggaatggtcaaggtgtgtatgtaagtacacttctcaatgcacttggagg |
157 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||| |
|
|
| T |
26756198 |
aagcagagctatatgcaaagaagaaggaggcggaggggatcgtgacacttgggaatggtcaaggggtgtgtgtaagtacccttctcaacgcacttggagg |
26756099 |
T |
|
| Q |
158 |
tgattataccgctgtcagggactacttgatgataaatggtggcatgtttcgagatattgcgaagattaatgctgaggctatacgcggacttgaacctaag |
257 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26756098 |
tgattatacagctgtaagggactacttgatgataaatggtggcatgtttcgagatattgcgaagattaatgctgaggctatacgcggacttgaacctaag |
26755999 |
T |
|
| Q |
258 |
attagtatttggactaatggtgataagggtggcgaaaaaactgacggtggcttgggtatgaaagaagttgctggtgtgtacaagatgttgccacctctat |
357 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26755998 |
attagtatttggactaatggtgataacggtggcgaaaaaactgacggtggcataggtatgaaagaagttgctggtgtgtacaagatgttgccacctctgt |
26755899 |
T |
|
| Q |
358 |
ttaagacagtccatgagcaaacaggcatgt |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
26755898 |
ttaagacagtccatgagcaaacaggcatgt |
26755869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 568 - 850
Target Start/End: Complemental strand, 26755764 - 26755482
Alignment:
| Q |
568 |
gcttggtattttatgaacggaatttttgcgataaaaacaaaactcctagaaggactaacatcacatcgtggtcttttttatttggtagtatgcatactca |
667 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26755764 |
gcttggtattttatgaacggaatttttgcgataaaaacaaaactcctagaaggactaacatcacatcgtggtctttttcatttggtagtatgcatactca |
26755665 |
T |
|
| Q |
668 |
tttcatgaaaaacaagtgctactaattcagtaactctatttcattttcatgtttcgaagagttgtgttatataaacattatacataattttctgcataat |
767 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26755664 |
tttcatgaaaaacaagtgctactaattcagtaactctatttcattttcatgtttcgaagagttgtgttatataaacattatacataattttctgcataat |
26755565 |
T |
|
| Q |
768 |
tatgctgagttcatgcttaaatatgagtgttaagaaccttgttacacaatggatcagttcgagatgaaataagacggcagtgc |
850 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26755564 |
tatgctgagttcatgcttaaatatgagtgttaacaaccttgttacacaacggatcagttcgagatgaaataagacggcagtgc |
26755482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 462 - 503
Target Start/End: Complemental strand, 26755870 - 26755829
Alignment:
| Q |
462 |
gtagctccttttattgtgtgatacatgtgactgattcactag |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26755870 |
gtagctccttttattgtgtgatacatgtgactgattcactag |
26755829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 9e-97; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 58 - 405
Target Start/End: Complemental strand, 49202200 - 49201848
Alignment:
| Q |
58 |
aagcagagctatatgcaaagaagaagtaggcggaggggatcgtgacacttgggaatggtcaaggtgtgtatgtaagtacacttctcaatgcacttggagg |
157 |
Q |
| |
|
||||||||||||| |||||||| || |||| |||||||| |||||||||||||||| |||||| | |||||||||||||||||| |||||||||||| |
|
|
| T |
49202200 |
aagcagagctatacgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctgaatgcacttggaaa |
49202101 |
T |
|
| Q |
158 |
tgattataccgctgtcagggactacttgatgataaatggtggcatgtttcgagatattgcgaagattaatgctgaggctatacgcggacttgaacctaag |
257 |
Q |
| |
|
| || || ||||| ||||| |||||||||||||||||||||||||||| ||| ||||| ||||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
49202100 |
caactacacagctgtaagggattacttgatgataaatggtggcatgtttcaagagattgctaagattaatgccgaggcagtacgcggacttgagcctaag |
49202001 |
T |
|
| Q |
258 |
attagtatttggactaatggt---gataagggtggcgaaaaaactgacggtggcttgggtatgaaagaagttgctggtgtgtacaagatgttgccacctc |
354 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| ||||||||||| |||| | ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
49202000 |
attagtatttggactaatggtagtgatagtggtggtgaaaaaactgaaggtgccatgggtatgaaagaagttgctggtgtctacaagatgttgccacctc |
49201901 |
T |
|
| Q |
355 |
tatttaagacagtccatgagcaaacaggcatgttgc--cctgcatggatggga |
405 |
Q |
| |
|
| |||||||| |||||||||||||| |||||||||| ||||| ||||||||| |
|
|
| T |
49201900 |
tgtttaagactgtccatgagcaaacgggcatgttgcctcctgcttggatggga |
49201848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 58 - 465
Target Start/End: Complemental strand, 49187220 - 49186812
Alignment:
| Q |
58 |
aagcagagctatatgcaaagaagaagtaggcggaggggatcgtgacacttgggaatggtcaaggtgtgtatgtaagtacacttctcaatgcacttggagg |
157 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||| ||||| || ||||||||||| | | |||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
49187220 |
aagcagagctttatgcaaagaaaaaggaggcagagggaattgtgacacttggacaagctcaaggagcgtatgtaagtacacttctcaatgcacttggaaa |
49187121 |
T |
|
| Q |
158 |
tgattataccgctgtcagggactacttgatgataaatggtggcatgtttcgagatattgcgaagattaatgctgaggctatacgcggacttgaacctaag |
257 |
Q |
| |
|
|| || || ||||| ||||| ||||||||||||||||||| |||||||| ||| ||||| ||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
49187120 |
cgactacacagctgtaagggattacttgatgataaatggtgacatgtttcaagagattgctaagattaatgccgaggcaatacgcggacttgagcctaag |
49187021 |
T |
|
| Q |
258 |
attagtatttggactaat---ggtgataagggtggcgaaaaaactgacggtggcttgggtatgaaagaagttgctggtgtgtacaagatgttgccacctc |
354 |
Q |
| |
|
|||||||||||||||||| |||||||| |||| | || |||||| |||| | ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
49187020 |
attagtatttggactaatggtggtgataatagtgggggaataactgatggtgccatgggtatgaaagaagttgctggtgtctacaagatgttgccacctc |
49186921 |
T |
|
| Q |
355 |
tatttaagacagtccatgagcaaacaggcatgttgc--cctgcatggatgggatcccaccttatctgacagaagttcttaattagtaggatgcaagtatt |
452 |
Q |
| |
|
| |||||||| |||||||||||||| |||||||||| ||||| ||||||||| |||||||||| | ||| |||| ||||| | |||||||||||| |
|
|
| T |
49186920 |
tgtttaagactgtccatgagcaaacgggcatgttgcctcctgcttggatggga----gccttatctgagaaaagctcttgattaggatgatgcaagtatt |
49186825 |
T |
|
| Q |
453 |
aggtttatagtag |
465 |
Q |
| |
|
|||||||||||| |
|
|
| T |
49186824 |
tggtttatagtag |
49186812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 58 - 388
Target Start/End: Complemental strand, 49207155 - 49206822
Alignment:
| Q |
58 |
aagcagagctatatgcaaagaagaagtaggcggaggggatcgtgacacttgggaatggtcaaggtgtgtatgtaagtacacttctcaatgcacttggagg |
157 |
Q |
| |
|
||||||||||||| |||||||| || |||| |||||||| ||||||||||||||| |||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
49207155 |
aagcagagctatacgcaaagaaaaaagaggcagaggggattatgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaa |
49207056 |
T |
|
| Q |
158 |
tgattataccgctgtcagggactacttgatgataaatggtggcatgtttcgagatattgcgaagattaatgctgaggctatacgcggacttgaacctaag |
257 |
Q |
| |
|
| || || ||||| ||||| |||||||||||||||||||||||||||| ||| ||||| ||||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
49207055 |
caactacacagctgtaagggattacttgatgataaatggtggcatgtttcaagagattgctaagattaatgccgaggcggtacgcggacttgagcctaag |
49206956 |
T |
|
| Q |
258 |
attagtatttggactaatggtg---ataagggtggcgaaaaaactgacggtggcttgggtatgaaagaagttgctggtgtgtacaagatgttgccacctc |
354 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| | || |||||| |||| | ||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
49206955 |
attagtatttggactaatggtggtgataataatgggggaataactgaaggtgccatgggtatgaaagaagttgctggtgtctacaagatgttgccgcctc |
49206856 |
T |
|
| Q |
355 |
tatttaagacagtccatgagcaaacaggcatgtt |
388 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||| |
|
|
| T |
49206855 |
tgtttaagactgtccatgagcaaacaggcatgtt |
49206822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 58 - 408
Target Start/End: Complemental strand, 49211729 - 49211386
Alignment:
| Q |
58 |
aagcagagctatatgcaaagaagaagtaggcggaggggatcgtgacacttgggaatggtcaaggtgtgtatgtaagtacacttctcaatgcacttggagg |
157 |
Q |
| |
|
|||||||||| || |||||||| || |||| |||||||| |||||||||||||||| |||||| | |||||||||||||||||| |||||||||||| |
|
|
| T |
49211729 |
aagcagagctgtacgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctgaatgcacttggaaa |
49211630 |
T |
|
| Q |
158 |
tgattataccgctgtcagggactacttgatgataaatggtggcatgtttcgagatattgcgaagattaatgctgaggctatacgcggacttgaacctaag |
257 |
Q |
| |
|
| ||||| || || ||||| |||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
49211629 |
caactatacagcagtaagggattacttgatgataaatggtggcatgtttcaagagattgctaagattaatgctgaggcggtacgcggacttgagcctaag |
49211530 |
T |
|
| Q |
258 |
attagtatttggactaatggtgataagggtggcgaaaaaactgacggtggcttgggtatgaaagaagttgctggtgtgtacaagatgttgccacctctat |
357 |
Q |
| |
|
|||||||||||||||||| ||||| || || | || |||| | ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
49211529 |
attagtatttggactaat---------ggtggtgataatagtgggggtgaaggtgcgatgaaagaagttgctggtgtgtacaagatgttgccacctctgt |
49211439 |
T |
|
| Q |
358 |
ttaagacagtccatgagcaaacaggcatgttgc--cctgcatggatgggatcc |
408 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
49211438 |
ttaagactgtccatgagcaaacaggcatgttgcctcctgcttggatgggatcc |
49211386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 58 - 279
Target Start/End: Complemental strand, 49190911 - 49190690
Alignment:
| Q |
58 |
aagcagagctatatgcaaagaagaagtaggcggaggggatcgtgacacttgggaatggtcaaggtgtgtatgtaagtacacttctcaatgcacttggagg |
157 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| ||||| || |||||||||||||||| |||||| |||||| ||||| |||||||||||||||||||| |
|
|
| T |
49190911 |
aagcagagctatatgcaaagaaaaaggaggcagagggaattgtgacacttgggaatgctcaaggggtgtatctaagtgcacttctcaatgcacttggaaa |
49190812 |
T |
|
| Q |
158 |
tgattataccgctgtcagggactacttgatgataaatggtggcatgtttcgagatattgcgaagattaatgctgaggctatacgcggacttgaacctaag |
257 |
Q |
| |
|
| || || ||||| ||||| | |||||||||||||||||||||||||| ||| || || ||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
49190811 |
caactacactgctgtaagggatttcttgatgataaatggtggcatgtttcaagagatcgctaagattaatgctgaggcagtacgcggacttgagcctaag |
49190712 |
T |
|
| Q |
258 |
attagtatttggactaatggtg |
279 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
49190711 |
attagtatttggactaatggtg |
49190690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 49190663 - 49190590
Alignment:
| Q |
315 |
atgaaagaagttgctggtgtgtacaagatgttgccacctctatttaagacagtccatgagcaaacaggcatgtt |
388 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| | |||||||| || ||||||||||| || ||||| |
|
|
| T |
49190663 |
atgaaagaagttgctggtgtctacaagatgttgccacctttgtttaagactgttcatgagcaaacgggaatgtt |
49190590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 2e-91; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 58 - 465
Target Start/End: Complemental strand, 31527027 - 31526628
Alignment:
| Q |
58 |
aagcagagctatatgcaaagaagaagtaggcggaggggatcgtgacacttgggaatggtcaaggtgtgtatgtaagtacacttctcaatgcacttggagg |
157 |
Q |
| |
|
|||| ||||||||||||||||| || |||| |||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31527027 |
aagcggagctatatgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaaggagtgtatgtaagtacacttctcaatgcacttggaaa |
31526928 |
T |
|
| Q |
158 |
tgattataccgctgtcagggactacttgatgataaatggtggcatgtttcgagatattgcgaagattaatgctgaggctatacgcggacttgaacctaag |
257 |
Q |
| |
|
|| || || ||| | ||||| |||||||||||||||||||||||||||| ||| || || ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
31526927 |
cgactacacagctctaagggattacttgatgataaatggtggcatgtttcaagagatggctaagattaatgctgaggcggtacgtggacttgaacctaag |
31526828 |
T |
|
| Q |
258 |
attagtatttggactaat---ggtgataagggtggcgaaaaaactgacggtggcttgggtatgaaagaagttgctggtgtgtacaagatgttgccacctc |
354 |
Q |
| |
|
|||||||||||||||||| ||||| || || |||||| ||| ||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
31526827 |
attagtatttggactaatggaggtgacaatggaggcgaa---------ggttctatgggtatgaaagaggttgctggtgtttacaagatgttgccacctt |
31526737 |
T |
|
| Q |
355 |
tatttaagacagtccatgagcaaacaggcatgttgc--cctgcatggatgggatcccaccttatctgacagaagttcttaattagtaggatgcaagtatt |
452 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||| ||||| ||||| ||| |||||||| |||| ||| |||||||||| |||||||||||||| |
|
|
| T |
31526736 |
tgtttaagactgtccatgagcaaacaggcatgttgcctcctgcttggatagga----accttatcagacaaaagctcttaattaggaggatgcaagtatt |
31526641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 58 - 465
Target Start/End: Original strand, 32593374 - 32593770
Alignment:
| Q |
58 |
aagcagagctatatgcaaagaagaagtaggcggaggggatcgtgacacttgggaatggtcaaggtgtgtatgtaagtacacttctcaatgcacttggagg |
157 |
Q |
| |
|
||||||||||||| |||||||| || |||| || ||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32593374 |
aagcagagctatacgcaaagaaaaaagaggcagaagggattgtgacacttgggaatgctcaaggagtgtatgtaagtacacttctcaatgcacttggaaa |
32593473 |
T |
|
| Q |
158 |
tgattataccgctgtcagggactacttgatgataaatggtggcatgtttcgagatattgcgaagattaatgctgaggctatacgcggacttgaacctaag |
257 |
Q |
| |
|
|| || || ||| | ||||| |||||||||||||||||||||||||||| ||| || || ||||| ||||||||||| ||| ||||||||||||||| |
|
|
| T |
32593474 |
cgactacacagctctaagggattacttgatgataaatggtggcatgtttcaagagatggctaagatcaatgctgaggcagtacatggacttgaacctaag |
32593573 |
T |
|
| Q |
258 |
attagtatttggactaatggtgataagggtggcgaaaaaactgacggtggcttgggtatgaaagaagttgctggtgtgtacaagatgttgccacctctat |
357 |
Q |
| |
|
|||||||||||||||||| || |||| || ||| || ||| |||| |||||||| ||||||||||| ||||||||| |||||||||| | |
|
|
| T |
32593574 |
attagtatttggactaat---------ggaggcggaataacggaaggttctatgggcatgaaagaggttgctggtgtttacaagatgctgccacctctgt |
32593664 |
T |
|
| Q |
358 |
ttaagacagtccatgagcaaacaggcatgttgc--cctgcatggatgggatcccaccttatctgacagaagttcttaattagtaggatgcaagtattagg |
455 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||| ||||||||| |||||||| |||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
32593665 |
ttaagactgtccatgagcaaacaggcatgttgcctcctgcttggatggga----accttatccgacaaaagctcttaattaggaggatgcaagtattagg |
32593760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 58 - 476
Target Start/End: Complemental strand, 51823917 - 51823495
Alignment:
| Q |
58 |
aagcagagctatatgcaaagaagaagtaggcggaggggatcgtgacacttgggaatggtcaaggtgtgtatgtaagtacacttctcaatgcacttggagg |
157 |
Q |
| |
|
||||||| ||||| |||||||| || |||| |||||||| ||||||||||| |||| |||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
51823917 |
aagcagatctatacgcaaagaaaaaagaggcagaggggattgtgacacttggaaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaa |
51823818 |
T |
|
| Q |
158 |
tgattataccgctgtcagggactacttgatgataaatggtggcatgtttcgagatattgcgaagattaatgctgaggctatacgcggacttgaacctaag |
257 |
Q |
| |
|
|| || || ||| | ||||| |||||||||||||||||||||||||||| ||| || || ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
51823817 |
cgactacacagctctaagggattacttgatgataaatggtggcatgtttcaagagatggctaagattaatgctgaggcagtacgtggacttgaacctaag |
51823718 |
T |
|
| Q |
258 |
attagtatttggactaat---ggtgataagggtggcgaaaaaactgacggtggcttgggtatgaaagaagttgctggtgtgtacaagatgttgccacctc |
354 |
Q |
| |
|
|||||||||||||||||| || || || || |||| || | | || ||| ||||||||||||| ||||||||||| ||||||||| ||||||||| |
|
|
| T |
51823717 |
attagtatttggactaatggaggggacaatggaggcggaatagccgaaggttctatgggtatgaaagaggttgctggtgtctacaagatgctgccacctc |
51823618 |
T |
|
| Q |
355 |
tatttaagacagtccatgagcaaacaggcatgttgc--cctgcatggatgggatcccaccttatctgacagaagttcttaattagtaggatgc---aagt |
449 |
Q |
| |
|
| || ||||| ||||||||||||||||||||||||| ||||| ||||||||| |||||||| |||| ||| |||||||||| ||||||| |||| |
|
|
| T |
51823617 |
tgttcaagactgtccatgagcaaacaggcatgttgcctcctgcttggatggga----accttatccgacaaaagctcttaattaggaggatgcaagaagt |
51823522 |
T |
|
| Q |
450 |
attaggtttatagtagctccttttatt |
476 |
Q |
| |
|
|||||||||||||||| ||||||||| |
|
|
| T |
51823521 |
attaggtttatagtagtaccttttatt |
51823495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 58 - 277
Target Start/End: Complemental strand, 37030366 - 37030147
Alignment:
| Q |
58 |
aagcagagctatatgcaaagaagaagtaggcggaggggatcgtgacacttgggaatggtcaaggtgtgtatgtaagtacacttctcaatgcacttggagg |
157 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||| ||||| || |||||| |||| | | |||||| ||||||||||||| |||||| |||||||||||| |
|
|
| T |
37030366 |
aagcagagctttatgcaaagaaaaaggaggcagagggaattgtgacagttggacaagctcaaggggtgtatgtaagtaaacttcttaatgcacttggaaa |
37030267 |
T |
|
| Q |
158 |
tgattataccgctgtcagggactacttgatgataaatggtggcatgtttcgagatattgcgaagattaatgctgaggctatacgcggacttgaacctaag |
257 |
Q |
| |
|
|| || || ||||| ||||| |||||||||||||||||||||||||||| ||| ||||| |||||||| || ||||| ||||| |||||||| |||||| |
|
|
| T |
37030266 |
cgactacacagctgtgagggattacttgatgataaatggtggcatgtttcaagagattgctaagattaacgccgaggcaatacgaggacttgagcctaag |
37030167 |
T |
|
| Q |
258 |
attagtatttggactaatgg |
277 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
37030166 |
attagtatttggactaatgg |
37030147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 312 - 388
Target Start/End: Complemental strand, 37030133 - 37030057
Alignment:
| Q |
312 |
ggtatgaaagaagttgctggtgtgtacaagatgttgccacctctatttaagacagtccatgagcaaacaggcatgtt |
388 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| | |||||||| |||||||||||||| || ||||| |
|
|
| T |
37030133 |
ggtatgaaagaagttgctggtgtctacaagatgttgccacctttgtttaagactgtccatgagcaaacgggaatgtt |
37030057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 702 - 747
Target Start/End: Original strand, 32594186 - 32594231
Alignment:
| Q |
702 |
tctatttcattttcatgtttcgaagagttgtgttatataaacatta |
747 |
Q |
| |
|
||||||| ||| ||||||||||||||||| | |||||||||||||| |
|
|
| T |
32594186 |
tctattttattatcatgtttcgaagagttatattatataaacatta |
32594231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 568 - 747
Target Start/End: Original strand, 21502 - 21671
Alignment:
| Q |
568 |
gcttggtattttatgaacggaatttttgcgataaaaacaaaactcctagaaggactaacatcacatcgtggtcttttttatttggtagtatgcatactca |
667 |
Q |
| |
|
|||||||||| |||||| ||||| ||| || ||||| ||||||||||||||||||| |||||| | ||||| |||||||||| |||||||||||||| |
|
|
| T |
21502 |
gcttggtattatatgaattgaattattgtga-aaaaataaaactcctagaaggactagcatcactttgtggt--tttttatttgtcagtatgcatactca |
21598 |
T |
|
| Q |
668 |
tttcatg-aaaaacaagtgctactaattcagtaactctatttcattttcatgtttcgaagagttgtgttatataaacatta |
747 |
Q |
| |
|
||||| | ||||||||| ||||||| | ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21599 |
tttcaagaaaaaacaagagctactagt--------tctatttcattatcatgtttcgaagagttgtgttatataaacatta |
21671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 357 - 465
Target Start/End: Original strand, 52267392 - 52267502
Alignment:
| Q |
357 |
tttaagacagtccatgagcaaacaggcatgttgc--cctgcatggatgggatcccaccttatctgacagaagttcttaattagtaggat----gcaagta |
450 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||| ||||||||| |||||||| |||| ||| |||||||||| ||||| ||||||| |
|
|
| T |
52267392 |
tttaagactgtccatgagcaaacaggcatgttgcctcctgcttggatggga----accttatccgacaaaagctcttaattaggaggatgcaagcaagta |
52267487 |
T |
|
| Q |
451 |
ttaggtttatagtag |
465 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
52267488 |
ttaggtttatagtag |
52267502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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