View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18361_high_10 (Length: 397)
Name: NF18361_high_10
Description: NF18361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18361_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 31078921 - 31078525
Alignment:
| Q |
1 |
atgaatattatgattttggcaaatttggtgtgataccaa--acatattctatacaagataatgagtatgttttgacgttggaacttttggaacatattta |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31078921 |
atgaatattatgattttggcaaatttggtgtgataccaattacatattctatacaagataatgagtatgttttgacgttggaacctttggaacatattta |
31078822 |
T |
|
| Q |
99 |
tgcaacatttacttttatgagaaatgctaagaaa-------------cattgtaatgtaaaatgtggaaaagttgtatatgtaattttttaaaatcaaga |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| |||| |
|
|
| T |
31078821 |
tgcaacatttacttttatgagaaatgctaagaaaactaatatagaaacattgtaatgtaaaatgtggaaaagttgtatatttaactttttaaaattaaga |
31078722 |
T |
|
| Q |
186 |
atgtgtggttttcaatgaaattttttcacttttaactttcttaactaatatctcagggatactagttaacatgaccttattaatttttattgatctttgt |
285 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31078721 |
atatgtggtttttaatgaaattttttcacttttaactttcttaactaatatatcagcaatactagttaacatgaccttattaatttttattgatctttgt |
31078622 |
T |
|
| Q |
286 |
ggcttcgcttctcaattcttaccaagaagccacccttcatcaatgaggtaaggtgtgcaatgtactccggctcaacccctttatccatcgcaggaac |
382 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31078621 |
ggcttcgcttctcaattcttaccgagaagccacctttcatcaatgaggtaaggtgtgcaatgtactccggctcaacccctttatccattgcaggaac |
31078525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 291 - 382
Target Start/End: Complemental strand, 31127934 - 31127843
Alignment:
| Q |
291 |
cgcttctcaattcttaccaagaagccacccttcatcaatgaggtaaggtgtgcaatgtactccggctcaacccctttatccatcgcaggaac |
382 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||||| | || |||||||||||| | ||||||||||||||||||||||||| |||||||| |
|
|
| T |
31127934 |
cgcttctcaatctttaccaggaagccacctttcattatcgaagtaaggtgtgcagcgaactccggctcaacccctttatccattgcaggaac |
31127843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 24123320 - 24123380
Alignment:
| Q |
170 |
ttttttaaaatcaagaatgtgtggttttcaatgaaattttttcacttttaactttcttaac |
230 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| ||| |||| |||||||||||| ||||| |
|
|
| T |
24123320 |
ttttttaaaatcaagaatttgttgttttcaattaaaattttctacttttaacttttttaac |
24123380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University