View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18361_high_14 (Length: 374)
Name: NF18361_high_14
Description: NF18361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18361_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 12 - 360
Target Start/End: Original strand, 36893411 - 36893759
Alignment:
| Q |
12 |
tcatcatgtttctttctattctcacttctagaaaacaagccaaagattttcgtcgcgatttgccattgaaacttcttcttgggttaagttctctttttgt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893411 |
tcatcatgtttctttctattctcacttctagaaaacaagccaaagattttcgtcgcgatttgccattgaaacttcttcttgggttaagttctctttttgt |
36893510 |
T |
|
| Q |
112 |
gtccattgcttcaatgtttgtttcattctgcactggacannnnnnnctgcttagccataattttaagtcggttttgttcccaatttacgcagcaacttgt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893511 |
gtccattgcttcaatgtttgtttcattctgcactggacatttttttctgcttagccataattttaagtcggttttgttcccaatttacgcagcaacttgt |
36893610 |
T |
|
| Q |
212 |
ttgcctgtgactttctatgccgttgcacaatttcctctttactttgatcttattacggctattttaaccaaggttccaatggcaaccgataaaggtgaca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893611 |
ttgcctgtgactttctatgccgttgcacaatttcctctttactttgatcttattacggctattttaaccaaggttccaatggcaaccgataaaggtgaca |
36893710 |
T |
|
| Q |
312 |
atttataattaagtgcttccatattgtggtgttggatagattcatatgt |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893711 |
atttataattaagtgcttccatattgtggtgttggatagattcatatgt |
36893759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 360
Target Start/End: Original strand, 36883408 - 36883756
Alignment:
| Q |
12 |
tcatcatgtttctttctattctcacttctagaaaacaagccaaagattttcgtcgcgatttgccattgaaacttcttcttgggttaagttctctttttgt |
111 |
Q |
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|||||||||| ||||| |||||||||||| | ||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||| ||||| |
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| T |
36883408 |
tcatcatgttcctttcaattctcacttctcgtaaacaagccaaagattttcgtcgagatttgccactgaaacttcttcttgggctaagttctctctttgt |
36883507 |
T |
|
| Q |
112 |
gtccattgcttcaatgtttgtttcattctgcactggacannnnnnnctgcttagccataattttaagtcggttttgttcccaatttacgcagcaacttgt |
211 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
36883508 |
gtccattgcttcaatgtttatttcattctgcactggacatttttttctgcttagccataattttaagtcgattttgttcccaatttatgcagcaacttgt |
36883607 |
T |
|
| Q |
212 |
ttgcctgtgactttctatgccgttgcacaatttcctctttactttgatcttattacggctattttaaccaaggttccaatggcaaccgataaaggtgaca |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| |||||| ||||||||||||| |
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| T |
36883608 |
ttgcctgtgactttctatgccgttgcacaatttcctctttactttgatcttataacgtctattttaactaaggttccaacggcaactgataaaggtgaca |
36883707 |
T |
|
| Q |
312 |
atttataattaagtgcttccatattgtggtgttggatagattcatatgt |
360 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||||| | |||||||||| |
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| T |
36883708 |
atttataattaagtgtttccatagtatggtgttggaaatattcatatgt |
36883756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 36903213 - 36903431
Alignment:
| Q |
12 |
tcatcatgtttctttctattctcacttctagaaaacaagccaaagattttcgtcgcgatttgccattgaaacttcttcttgggttaagttctctttttgt |
111 |
Q |
| |
|
|||||||||| |||| | ||||||| ||| ||||| ||| ||||||||||| | ||||||||| |||||||| | | ||| ||| ||| |||||||| |
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| T |
36903213 |
tcatcatgttcctttttgttctcacatctcaaaaacgagcaaaagattttcgcagggatttgccactgaaactttatatcgggctaatttcactttttgt |
36903312 |
T |
|
| Q |
112 |
gtccattgcttcaatgtttgtttcattctgcactggacannnnnnnctgcttagccataattttaagtcggttttgttcccaatttacgcagcaacttgt |
211 |
Q |
| |
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||| |||||||| ||| ||||||| ||||||||||| | ||||||||||| || ||||||| | |||||||| |||||| |||||| ||||| |
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| T |
36903313 |
gtcgattgcttctatgattgtttcgttctgcactggctacttttttctgcttagccacaaatttaagttgattttgttctcaatttctgcagcagcttgt |
36903412 |
T |
|
| Q |
212 |
ttgcctgtgactttctatg |
230 |
Q |
| |
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||||||||| |||||||| |
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| T |
36903413 |
ttgcctgtggttttctatg |
36903431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 20079220 - 20079129
Alignment:
| Q |
14 |
atcatgtttctttctattctcacttctagaaaacaagccaaagattttcgtcgcgatttgccattgaaacttcttcttgggttaagttctct |
105 |
Q |
| |
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|||||||| |||||||| ||||||||| ||||||||| | |||| || | | | |||||||||||||||||| |||||||||||||||| |
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| T |
20079220 |
atcatgttcctttctatactcacttctcgaaaacaagtcgaagacttcaatagaaacttgccattgaaacttctttttgggttaagttctct |
20079129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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