View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18361_high_3 (Length: 747)
Name: NF18361_high_3
Description: NF18361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18361_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 417 - 730
Target Start/End: Original strand, 17461155 - 17461465
Alignment:
| Q |
417 |
tatcttaatacatgtctttgacaaactagttgaagactaatatcattacaacaatagcattaatggtaaaatagtagcaaataaagcatacagattaatt |
516 |
Q |
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| T |
17461155 |
tatcttaatacatgtctttgacaaactagttgaatactaatatcattacgacaacagcattaatggtaaaatagtagcaaataaagcatactgattaatt |
17461254 |
T |
|
| Q |
517 |
atagatgttatccctttctgagaatccaaaatcatatatgctatactatttcagtagaatttctgatgagggttaaaacatcaaatttcactttcctttc |
616 |
Q |
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||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
17461255 |
atagatgttatccctttctgagagtccataatcatatatgc--tactatttcagtagaatttctgatgagggttaaaacatcaaa-ttcacttttctttc |
17461351 |
T |
|
| Q |
617 |
acattgttgatttcaaccttttacagggaactctcnnnnnnngctaagaaagcaaacaatgtatggtggcgcttaagtgggttgcttggcgatgaaaatc |
716 |
Q |
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| T |
17461352 |
acattgttgatttcaaccttttacagggaactctcaaaaaaagctaagaaagcaaacaatgtatggtggcgcttaagtgggttgcttggggatcaaaatc |
17461451 |
T |
|
| Q |
717 |
gcttgctgatgtac |
730 |
Q |
| |
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|||||||||||||| |
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| T |
17461452 |
gcttgctgatgtac |
17461465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 90 - 291
Target Start/End: Complemental strand, 17456051 - 17455853
Alignment:
| Q |
90 |
agataaatcctatatttggacatggatgtttctggtacccttagcagcttacgttttgtggcagcttccatacctcctcgttgtcaatgtattgtgccga |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||| |||| ||||| ||||||||| |
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| T |
17456051 |
agataaatcctatatttggacatggatgtttctggtacccttagcagcttacattctgtggcagcttctatacctcctcattgttaatgttttgtgccga |
17455952 |
T |
|
| Q |
190 |
aaaaggcttttaagagatcctgaagtcatgacttcctacaggtaatcaatggctacacacatgcttcattccctgcttttcagttcataataggagagag |
289 |
Q |
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| T |
17455951 |
caacggcttttaagagatcctgaaatcatgactt-ctacaggtaatcaatgaccacgcgcatacttcattccct--ttttcagttcataacaggagagag |
17455855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 603 - 730
Target Start/End: Complemental strand, 17455686 - 17455559
Alignment:
| Q |
603 |
ttcactttcctttcacattgttgatttcaaccttttacagggaactctcnnnnnnngctaagaaagcaaacaatgtatggtggcgcttaagtgggttgct |
702 |
Q |
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| T |
17455686 |
ttcacttttctttcacattttcgacttcaatgttttacagggaactctcaagaaaagctaagaaagcaaacaatgtatggtggcacttaagtgggttgct |
17455587 |
T |
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| Q |
703 |
tggcgatgaaaatcgcttgctgatgtac |
730 |
Q |
| |
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||| ||| |||||||||||||||||||| |
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| T |
17455586 |
tggggatcaaaatcgcttgctgatgtac |
17455559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 72 - 235
Target Start/End: Complemental strand, 17805419 - 17805256
Alignment:
| Q |
72 |
tacatggccttatgttgaagataaatcctatatttggacatggatgtttctggtacccttagcagcttacgttttgtggcagcttccatacctcctcgtt |
171 |
Q |
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||||||||||||| ||||||||||||||||| | || |||||| |||||||||| ||||||| || |||| ||||||||| ||| |||| |||| || |
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| T |
17805419 |
tacatggccttatattgaagataaatcctatctatgtacatggctgtttctggttcccttagtagtttacaccttgtggcaggttctatactacctcatt |
17805320 |
T |
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| Q |
172 |
gtcaatgtattgtgccgaaaaaggcttttaagagatcctgaagtcatgacttcctacaggtaat |
235 |
Q |
| |
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| T |
17805319 |
gtcaatgtcttacgccgacaacggtttttaagagatcccgaagtcatgacttcctataggtaat |
17805256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 321 - 376
Target Start/End: Complemental strand, 17455801 - 17455746
Alignment:
| Q |
321 |
agataggtactatattatccgtctttatactcaccgtaaaaatgacttgtatataa |
376 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17455801 |
agataggtactatattatttgtctttatactcaccgtaaaaatgacttgtatataa |
17455746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 5e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 115 - 315
Target Start/End: Complemental strand, 775479 - 775279
Alignment:
| Q |
115 |
atgtttctggtacccttagcagcttacgttttgtggcagcttccatacctcctcgttgtcaatgtattgtgccgaaaaaggcttttaagagatcctgaag |
214 |
Q |
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||||||||||||||||||||||||||| || |||||||||||| |||||||||| |||| ||||| |||||||||||| ||||||||||||||||||||| |
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| T |
775479 |
atgtttctggtacccttagcagcttacattatgtggcagcttctatacctcctcattgttaatgtcttgtgccgaaaacggcttttaagagatcctgaag |
775380 |
T |
|
| Q |
215 |
tcatgacttcctacaggtaatcaatggctacacacatgcttcattccctgcttttcagttcataataggagagagagggacgacaatagatagagtcgag |
314 |
Q |
| |
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||||||||||||| |||||||||| || |||| ||| |||||| |||| |||||||||||| || ||||||||||||||||||||||||||| |
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| T |
775379 |
tcatgacttcctataggtaatcaactatcgcatacatatttccttccctttttttgagttcataatagtaggaagagggacgacaatagatagagtcgag |
775280 |
T |
|
| Q |
315 |
a |
315 |
Q |
| |
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| T |
775279 |
a |
775279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 377 - 686
Target Start/End: Complemental strand, 775177 - 774869
Alignment:
| Q |
377 |
ccaaacttattagtctcatttaagt-aacttgaatatggtctatcttaatacatgtctttgacaaactagttgaagactaatatcattacaacaatagca |
475 |
Q |
| |
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||||||||||||||||||||| ||| ||||| |||||||||| |||| |||||| || ||||||||||||| ||| | ||||||||||| |
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| T |
775177 |
ccaaacttattagtctcattttagttaacttaaatatggtctgtcttgatacatttcattgacaaactagtagaatattaatatcatta----------- |
775089 |
T |
|
| Q |
476 |
ttaatggtaaaatagtagcaaataaagcatacagattaattatagatgttatccctttctgagaatcca--aaatcatatatgctatactatttcagtag |
573 |
Q |
| |
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||||||||||||||||||| ||| |||| |||||||||| ||||||| |||| |||||| |||| ||||||||| ||||| |||||||| ||| |
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| T |
775088 |
---atggtaaaatagtagcaaagaaaacatattgattaattattgatgttacccctccctgagagtccataaaatcatatctgcta--ctatttcaatag |
774994 |
T |
|
| Q |
574 |
aatttctgatgagggttaaaacatcaaat------------ttcactttcctttcacattgttgatttcaaccttttacagggaactctcnnnnnnngct |
661 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||| ||||||||||||||||| ||| |
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| T |
774993 |
aatttctgatgagggttaaaacatcaaattagtttatgcacttcacttttctttcacattgttgacttcaatgttttacagggaactctcaagaaaagct |
774894 |
T |
|
| Q |
662 |
aagaaagcaaacaatgtatggtggc |
686 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
774893 |
aagaaagcaaacaatgtatggtggc |
774869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 72 - 235
Target Start/End: Original strand, 52142566 - 52142729
Alignment:
| Q |
72 |
tacatggccttatgttgaagataaatcctatatttggacatggatgtttctggtacccttagcagcttacgttttgtggcagcttccatacctcctcgtt |
171 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||| ||||||| || |||||||| ||| |||| ||||| || |
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| T |
52142566 |
tacatggccttatgttgaagataaatcctatctttggacatggctgtttctggttcccttagtagcttacattctgtggcaggttctatacttcctcatt |
52142665 |
T |
|
| Q |
172 |
gtcaatgtattgtgccgaaaaaggcttttaagagatcctgaagtcatgacttcctacaggtaat |
235 |
Q |
| |
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|||||||| || ||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
52142666 |
gtcaatgtcttacgccgacaaaggcttttaagagatcctgaagtcatgacatcctacaggtaat |
52142729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 621 - 730
Target Start/End: Original strand, 52142789 - 52142898
Alignment:
| Q |
621 |
tgttgatttcaaccttttacagggaactctcnnnnnnngctaagaaagcaaacaatgtatggtggcgcttaagtgggttgcttggcgatgaaaatcgctt |
720 |
Q |
| |
|
|||||| ||||| |||| ||||||||||||| |||||||||||||||||| ||||||||||| |||||||| | |||| ||| |||||||| | |
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| T |
52142789 |
tgttgacttcaatctttcacagggaactctcaaaaaaagctaagaaagcaaacaatatatggtggcgcctaagtgggctatttggggatcaaaatcgcat |
52142888 |
T |
|
| Q |
721 |
gctgatgtac |
730 |
Q |
| |
|
||| |||||| |
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|
| T |
52142889 |
gctaatgtac |
52142898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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