View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18361_high_7 (Length: 467)
Name: NF18361_high_7
Description: NF18361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18361_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Original strand, 38813793 - 38814234
Alignment:
| Q |
18 |
acaaacttcttcagcacacatgggttatgtgggatcgtttgagctgaatggagtacacatcaagactcgagcaacatccgatgagcaaaagattgagaat |
117 |
Q |
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| T |
38813793 |
acaaacttcttcagcacacatgggttatgtgggatcgtttgagctgaatggagtacacatcaagaccagagcaacatccgatgagcaaaagattgagaat |
38813892 |
T |
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| Q |
118 |
catataagatcgttcttgcatcgttctaacagtcatcgaaccaaagttatcgggcttgatgctgaatggcttctgttacatggcacggagccaggaacag |
217 |
Q |
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| T |
38813893 |
catataagatcgttcttgcatcgttctaacaatcatcgaaccaaagttatcgggcttgatgctgaatggcttctgttacatggcacggagccaggaacag |
38813992 |
T |
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| Q |
218 |
ttaccaaatccaaatgtgcaaccctgcagctctgtgatggacactcgtgtcttatcattcacctaaatggtttcaattgctttgagagttgggcatatga |
317 |
Q |
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| T |
38813993 |
ttaccaaatccaaatgtgcaacactgcagttctgtgatggacactcgtgtcttatcattcacctaaatggtttcaattgctttgagagttgggcatatga |
38814092 |
T |
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| Q |
318 |
ttctgtccacaaatcactgcttaattttcttcgtctcccaaatgttacatttgttggagttggaatcaaagagaatttggctaagttggagaagcagtat |
417 |
Q |
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| T |
38814093 |
ttctgtccacaaatcactgcttaattttcttcgtctcccaaatgttacatttgttggagttggaatcaaagagaatttggctaagttggagaagcagtat |
38814192 |
T |
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| Q |
418 |
ggatttggatgtagaaatgctgttgaacttggaccctatgct |
459 |
Q |
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| T |
38814193 |
ggatttggatgtagaaatgctgttgaacttggaccctttgct |
38814234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 331 - 449
Target Start/End: Original strand, 38818506 - 38818624
Alignment:
| Q |
331 |
tcactgcttaattttcttcgtctcccaaatgttacatttgttggagttggaatcaaagagaatttggctaagttggagaagcagtatggatttggatgta |
430 |
Q |
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| T |
38818506 |
tcactacttaactttcttcgtatgccaaatgttacctttgttggagttggaatcaaagacaatgtggccaagttggaaacatactatgggattggatgta |
38818605 |
T |
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| Q |
431 |
gaaatgctgttgaacttgg |
449 |
Q |
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| T |
38818606 |
gaaatgctgtggaacttgg |
38818624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 454
Target Start/End: Original strand, 38820731 - 38820855
Alignment:
| Q |
330 |
atcactgcttaattttcttcgtctcccaaatgttacatttgttggagttggaatcaaagagaatttggctaagttggagaagcagtatggatttggatgt |
429 |
Q |
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| T |
38820731 |
atcattgcttaattttcttcgtcttccagattatacctttgttggtgttggtatcaatcataatttggctaaacttgagaaggaatatggggttagatgc |
38820830 |
T |
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| Q |
430 |
agaaatgctgttgaacttggaccct |
454 |
Q |
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| T |
38820831 |
agaaatgctgtggaacttggaccct |
38820855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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