View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18361_high_8 (Length: 451)
Name: NF18361_high_8
Description: NF18361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18361_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 42143832 - 42143398
Alignment:
| Q |
1 |
acaagaatttcatagcctatgctggttctcttcctttctcctcctgatatgcctttgagatatcctccacctattttcgtgtggcgacatctatggttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42143832 |
acaagaatttcatagcctatgctggttctcttcctttctcctcctgatatgcctttgagatatcctccacctattttcgtgtggcgacatctatggttgc |
42143733 |
T |
|
| Q |
101 |
acaaaagattatttaggaatacagttcaatttctttatttgagcattcaataatcatattttacgtaaaattttgatccatgctagacacacacctttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42143732 |
acaaaagattatttaggaatacagtttaatttctttatttgagtattcaataatcatattttacgtcaaattttgatccatgctagacacacacctttct |
42143633 |
T |
|
| Q |
201 |
aggcctagatccttgatagtattctcaactcttgcatatttttcttgcttgctcatgttggttggtagccttaagaatgcagagaagatcaatgtttctt |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42143632 |
aggcctagatccctgatagtattctcaactcttgcatatttttcttgcttgctcatgttggttggtagccttaagaatgcagagaagatcaatgtttctt |
42143533 |
T |
|
| Q |
301 |
caactgtaagttgtgggaaaagcacatcctcttgtgttacaaatccaatcctataggtagcataaaagagagagacattaaagtacattgttagcacata |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42143532 |
caactgtaagttgtgggaaaagcacatcctcttgtgttacaaatccaatcctataggtagcataaaagagagatacattaaagtacattgttagcacata |
42143433 |
T |
|
| Q |
401 |
ttcatacattgaatcatagatgctgatgttctaac |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
42143432 |
ttcatacattgaatcatagatgctgatgttctaac |
42143398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University