View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18361_low_11 (Length: 395)
Name: NF18361_low_11
Description: NF18361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18361_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 32125366 - 32125677
Alignment:
| Q |
18 |
ttgatccattgcattcttttaatctaggaaattacactcgagtgaccatgagatgaggatattannnnnnnnnnnnn--agtgtatttccttgattaaag |
115 |
Q |
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| T |
32125366 |
ttgatccattgcattcttttaatctaggaaattacactcgagtgaccatgagatgaggatattatctctctctctctctagtgtatttccttgattaaag |
32125465 |
T |
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| Q |
116 |
aaattcattggatcatcaaatattccactaccaatcaatctgtttgatttttgtctttttgttgtcgattcgagattattgttttacacacacctttgag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32125466 |
aaattcattggatcatcaaatattccactaccaatcaatctgtttgatttttgtctttttgttgtcgattcgagattattgttttacacatacctttgag |
32125565 |
T |
|
| Q |
216 |
ccgtgattttttactgttctttttagaatttgtcattgtttccagttgttgtggttttcgtttacgcacggttcaataattgaaaacttaggaagtttgg |
315 |
Q |
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| T |
32125566 |
ccgtgattttttactgttctttttagaatttgtcattgtttccagttgttatggtttt-------tcacggttcaataattgaaaacttaggaagtttgg |
32125658 |
T |
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| Q |
316 |
gttggaatatcacaattgg |
334 |
Q |
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| T |
32125659 |
gttggaatatcacaattgg |
32125677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 32121219 - 32121263
Alignment:
| Q |
18 |
ttgatccattgcattcttttaatctaggaaattacactcgagtga |
62 |
Q |
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| T |
32121219 |
ttgatccattgcatttttttaatcaaggaaattacactcgagtga |
32121263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 11815003 - 11814965
Alignment:
| Q |
95 |
agtgtatttccttgattaaagaaattcattggatcatca |
133 |
Q |
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| T |
11815003 |
agtgtatttccttgatcaaagaaattcattggatcatca |
11814965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 129
Target Start/End: Complemental strand, 14011688 - 14011654
Alignment:
| Q |
95 |
agtgtatttccttgattaaagaaattcattggatc |
129 |
Q |
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| T |
14011688 |
agtgtatttccttgattaaagaaattcattggatc |
14011654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 11815088 - 11815044
Alignment:
| Q |
18 |
ttgatccattgcattcttttaatctaggaaattacactcgagtga |
62 |
Q |
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| T |
11815088 |
ttgatccattgcatttttttaatcaaagaaattacacttgagtga |
11815044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 14011773 - 14011729
Alignment:
| Q |
18 |
ttgatccattgcattcttttaatctaggaaattacactcgagtga |
62 |
Q |
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| T |
14011773 |
ttgatccattgcatttttttaatcaaagaaattacacttgagtga |
14011729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 50941900 - 50941936
Alignment:
| Q |
18 |
ttgatccattgcattcttttaatctaggaaattacac |
54 |
Q |
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| T |
50941900 |
ttgatccattgcattcttttaatcaagaaaattacac |
50941936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 46073293 - 46073252
Alignment:
| Q |
95 |
agtgtatttccttgattaaagaaattcattggatcatcaaat |
136 |
Q |
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| T |
46073293 |
agtgtattttcttgattaaagaaattcgttggatcatcaaat |
46073252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 18384941 - 18384897
Alignment:
| Q |
95 |
agtgtatttccttgattaaagaaattcattggatcatcaaatatt |
139 |
Q |
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|||||||||||||||||||||||| || |||||| |||||||||| |
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| T |
18384941 |
agtgtatttccttgattaaagaaactcgttggattatcaaatatt |
18384897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 18385026 - 18384984
Alignment:
| Q |
18 |
ttgatccattgcattcttttaatctaggaaattacactcgagt |
60 |
Q |
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||||||||||| ||| |||||||| |||||||||||||||||| |
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| T |
18385026 |
ttgatccattgaatttttttaatcaaggaaattacactcgagt |
18384984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 46073377 - 46073335
Alignment:
| Q |
18 |
ttgatccattgcattcttttaatctaggaaattacactcgagt |
60 |
Q |
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||||||||||| |||||||||||| || ||||||||||||||| |
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| T |
46073377 |
ttgatccattgtattcttttaatcaagaaaattacactcgagt |
46073335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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