View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18361_low_16 (Length: 367)
Name: NF18361_low_16
Description: NF18361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18361_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 48319178 - 48318955
Alignment:
| Q |
12 |
atcaatttgcatcacagtttgaaagtgtcaaacacgacttaatccagtacattctattctaggagattctctcttctattaggttgtctgacagacccca |
111 |
Q |
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| T |
48319178 |
atcaatttgcatcacagtttgaaagtgtcaaacacgacttaatccagtacattctattctaggagattctctcttctattaggttgtctgacagacccca |
48319079 |
T |
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| Q |
112 |
gtttacgattaagaaatctgttattcagttatctttgtactggttgcacatcaagttagaaggatttatgagcacgaacttctgcaattcataattcaaa |
211 |
Q |
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| T |
48319078 |
gtttacgattaagaaatctgttattcagttatctttgtactggttgcacatcaagttagaaggatttatgagcacgaacttctgcaattcataattcaaa |
48318979 |
T |
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| Q |
212 |
tacggaaagcttttcaggatcaatt |
236 |
Q |
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|||||||||| |||||||||||||| |
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| T |
48318978 |
tacggaaagc-tttcaggatcaatt |
48318955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 236 - 351
Target Start/End: Complemental strand, 48318925 - 48318810
Alignment:
| Q |
236 |
tagttaactcactatttaaacacattttttcggttgaactgaagcagcaacaacaggaaagtttacaattgatatgaaatgtatttcaatagttactccg |
335 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48318925 |
tagttaactcactatgtaaacacattttttcggttgaactgaagcagcaacaacaggaaagtttacaattgatatgaaatgtatttcaatagttactccg |
48318826 |
T |
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| Q |
336 |
aggatcacaatgaact |
351 |
Q |
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| T |
48318825 |
aggatcacaatgaact |
48318810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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