View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18361_low_17 (Length: 347)
Name: NF18361_low_17
Description: NF18361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18361_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 328
Target Start/End: Complemental strand, 11136727 - 11136404
Alignment:
| Q |
13 |
atcaaaataaggttaaaaggtaagaaaaactcacttaggggtagtgatgatagaaaaccactccattccatcattgtcagcaattttcgagacaacgaaa |
112 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11136727 |
atcaaaataaggttacaaggtaagaaaaactcacttaggggtagtgatgatagaaaaccactccattccatcattgtcagcaattttcgagacaacgaaa |
11136628 |
T |
|
| Q |
113 |
aacctcggcacaatgaacaaatctccagccttcaaagttgtctccaaaactctcttaccatcaacaccaacaacttgaacgcggccacttcccctaacaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11136627 |
aacctcggcacaatgaacaaatctccagccttcaaagttgtctccaaaactctcttaccatcaacaccaacaacttgaacacggccacttcccctaacaa |
11136528 |
T |
|
| Q |
213 |
tgtaagtaacctgtaaagcag--------gagaatccaggagagcacatggatcttccatcaatcctcacaaggtcggctcctaaaccaacctcaccgac |
304 |
Q |
| |
|
||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11136527 |
tgtaagtaacctgtaaagcagaatcacaagagaatccgggcgagcacatggatcttccatcgatcctcacaaggtcggctcctaaaccaacctcaccgac |
11136428 |
T |
|
| Q |
305 |
caaaggaaggttcttagtgttcaa |
328 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
11136427 |
caaaggaaggttcttagtgttcaa |
11136404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 25 - 331
Target Start/End: Original strand, 23258555 - 23258869
Alignment:
| Q |
25 |
ttaaaaggtaagaaaaactcacttaggggtagtgatgatagaaaaccactccattccatcattgtcagcaattttcgagacaacgaaaaacctcggcaca |
124 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||| || |||||||||||||||||||||||| |
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|
| T |
23258555 |
ttaaaagttaagaaaaacttacttaggggtagtgatgatagagaaccactccattccatcattgttagcaatctttgagacaacgaaaaacctcggcaca |
23258654 |
T |
|
| Q |
125 |
atgaacaaatctccagccttcaaagttgtctccaaaactctcttaccatcaacaccaacaacttgaacgcggccacttcccctaacaatgtaagtaacct |
224 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |
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| T |
23258655 |
atgaacaaatctccagccttcaaagtggtctccaagactctcttaccatcaacaccaacaacctgaacacggccgcttcccctaacaatgtaagtaacct |
23258754 |
T |
|
| Q |
225 |
gtaaagcag--------gagaatccaggagagcacatggatcttccatcaatcctcacaaggtcggctcctaaaccaacctcaccgaccaaaggaaggtt |
316 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| |
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| T |
23258755 |
gcaaagcagaatcgcaagagaatccaggagagcacatggatcttccatcaatcctcacaagatcagctcctaaaccaacctcaccaaccaaaggaaggtt |
23258854 |
T |
|
| Q |
317 |
cttagtgttcaagac |
331 |
Q |
| |
|
||| ||||||||||| |
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|
| T |
23258855 |
cttggtgttcaagac |
23258869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 25 - 331
Target Start/End: Original strand, 23276433 - 23276747
Alignment:
| Q |
25 |
ttaaaaggtaagaaaaactcacttaggggtagtgatgatagaaaaccactccattccatcattgtcagcaattttcgagacaacgaaaaacctcggcaca |
124 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||| || |||||||||||||||||||||||| |
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|
| T |
23276433 |
ttaaaagttaagaaaaacttacttaggggtagtgatgatagagaaccactccattccatcattgttagcaatctttgagacaacgaaaaacctcggcaca |
23276532 |
T |
|
| Q |
125 |
atgaacaaatctccagccttcaaagttgtctccaaaactctcttaccatcaacaccaacaacttgaacgcggccacttcccctaacaatgtaagtaacct |
224 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
23276533 |
atgaacaaatctccagccttcaaagtggtctccaagactctcttaccatcaacaccaacaacctgaacacggccgcttcccctaacaatgtaagtaacct |
23276632 |
T |
|
| Q |
225 |
gtaaagcag--------gagaatccaggagagcacatggatcttccatcaatcctcacaaggtcggctcctaaaccaacctcaccgaccaaaggaaggtt |
316 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| |
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|
| T |
23276633 |
gcaaagcagaatcgcaagagaatccaggagagcacatggatcttccatcaatcctcacaagatcagctcctaaaccaacctcaccaaccaaaggaaggtt |
23276732 |
T |
|
| Q |
317 |
cttagtgttcaagac |
331 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
23276733 |
cttggtgttcaagac |
23276747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 30 - 331
Target Start/End: Original strand, 27542963 - 27543272
Alignment:
| Q |
30 |
aggtaagaaaaactcacttaggggtagtgatgatagaaaaccactccattccatcattgtcagcaattttcgagacaacgaaaaacctcggcacaatgaa |
129 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| || |||||||| |
|
|
| T |
27542963 |
aggtaagaaaaactcacttaggggtggtgatgatagaaaaccactccattccatcattgtcagcaatcttcgagacgacgaagaaccttggaacaatgaa |
27543062 |
T |
|
| Q |
130 |
caaatctccagccttcaaagttgtctccaaaactctcttaccatcaacaccaacaacttgaacgcggccacttcccctaacaatgtaagtaacctgtaaa |
229 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || || |||||||||||||||||||||||| |
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|
| T |
27543063 |
caaatctccggacttcaaagttgtctccaaaactctcttaccatcaacaccaacaacctgaacacggccgctccctctaacaatgtaagtaacctgtaaa |
27543162 |
T |
|
| Q |
230 |
gcag--------gagaatccaggagagcacatggatcttccatcaatcctcacaaggtcggctcctaaaccaacctcaccgaccaaaggaaggttcttag |
321 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | |
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| T |
27543163 |
gcagaatcacaagagaaaccaggagagcacatggatcttccatcaatcctcacaaggtcagctcctaaaccaacctcaccaaccaaaggaaggttcttgg |
27543262 |
T |
|
| Q |
322 |
tgttcaagac |
331 |
Q |
| |
|
|||||||||| |
|
|
| T |
27543263 |
tgttcaagac |
27543272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 25 - 327
Target Start/End: Original strand, 8986042 - 8986352
Alignment:
| Q |
25 |
ttaaaaggtaagaaaaactcacttaggggtagtgatgatagaaaaccactccattccatcattgtcagcaattttcgagacaacgaaaaacctcggcaca |
124 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||| ||||||||||||| | |
|
|
| T |
8986042 |
ttaaaagttaagaaaaactcacttaggggtagtgattatagaaaaccactccattccatcattttcagcaatctttgagacaacaaaaaacctcggcata |
8986141 |
T |
|
| Q |
125 |
atgaacaaatctccagccttcaaagttgtctccaaaactctcttaccatcaacaccaacaacttgaacgcggccacttcccctaacaatgtaagtaacct |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || || || |||||||||||||||||||||| |
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|
| T |
8986142 |
atgaacaaatctccagccttcaaagttgtctccaagactctcttaccatcaacaccaacaacctgaactcgtccgctccccctaacaatgtaagtaacct |
8986241 |
T |
|
| Q |
225 |
gtaaagcag--------gagaatccaggagagcacatggatcttccatcaatcctcacaaggtcggctcctaaaccaacctcaccgaccaaaggaaggtt |
316 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||| ||||||||||| || || |||||||||||||||||||| |||||||||||||| |
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|
| T |
8986242 |
gcaaagcagaatcacaagagaatccaggagagcacatggatcttcaatcaatcctcattagatcagctcctaaaccaacctcaccaaccaaaggaaggtt |
8986341 |
T |
|
| Q |
317 |
cttagtgttca |
327 |
Q |
| |
|
||| ||||||| |
|
|
| T |
8986342 |
cttggtgttca |
8986352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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