View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18361_low_19 (Length: 323)

Name: NF18361_low_19
Description: NF18361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18361_low_19
NF18361_low_19
[»] chr2 (1 HSPs)
chr2 (19-311)||(33969063-33969355)


Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 33969063 - 33969355
Alignment:
Q  19 tgattcgctacggcggcgagacgaagaggagaagcctaaagacctaccgccggcattgccagcaaggccaacgtcgagaggccggttgccgccggcgagg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33969063 tgattcgctacggcggcgagacgaagaggagaagcctaaagacctaccgccggcattgccagcaaggccaacgtcgagaggccggttgccgccggcgagg 33969162  T
Q  119 aggtctttgcctaaaagttttaaggttgacggtgaaaatggaaatgaaatggggcatagaaggaagggaagttttggaaataagaagttgatgttggatt 218  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33969163 aggtctttgcctaaaagttttaaggttgatggtgaaaatggaaatgaaatggggcatagaaggaagggaagttttggaaataagaagttgatgttggatt 33969262  T
Q  219 tcgaatctccttatgtggttatttcagaagagaacagtgttattagtgaagaagcttcaccttgtcctgtatcttcaattcctgttgatgatg 311  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33969263 tggaatctccttatgtggttatttcagaagagaacagtgttattagtgaagaagcttcaccttgtcccgtatcttcaattcctgttgatgatg 33969355  T

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