View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18361_low_2 (Length: 758)
Name: NF18361_low_2
Description: NF18361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18361_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 474 - 744
Target Start/End: Complemental strand, 46428221 - 46427951
Alignment:
| Q |
474 |
tatgaggtatatatcctatattttttaggcaatttacgtatcctgttctctgattggctgatgcacgttgtagtctctcttcgttttacacgtaagctct |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46428221 |
tatgaggtatatatcctatattttttaggcaatttacgtatcctgttctctgattggctgatgcacgttgtagtctctcttcgttttacacgtaagctct |
46428122 |
T |
|
| Q |
574 |
tataaacgacatcacagtcatcgcaaagttaccctttcaagaccacgacgacgcccttttattgcatttccttttgcagcaacgaaaaacaagagaaagg |
673 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46428121 |
tataaacgacatcacagtcatcgcaaagttaccctttcaagaccgcaacgacgcccttttattgcatttccttttgcagcaacgaaaaacaagagaaagg |
46428022 |
T |
|
| Q |
674 |
atcaaaaccttctcaaaaatccaatctttaagatccacacaacacttctcaattttctcattctatttttc |
744 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46428021 |
atcaaaaccttctcaaaaatccaatctttaagatccacacaacacttctcaattttctcattctatttttc |
46427951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 340 - 409
Target Start/End: Complemental strand, 46428548 - 46428479
Alignment:
| Q |
340 |
cgggtagttaattctttcnnnnnnnttattgtagtcaattatttattttctttattccattattaccaac |
409 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46428548 |
cgggtagttaattctttcaaaaaaattattgtagtcaattatttattttctttattccattattaccaac |
46428479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University