View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18361_low_20 (Length: 311)
Name: NF18361_low_20
Description: NF18361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18361_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 8718347 - 8718634
Alignment:
| Q |
1 |
aacaacaaacaagaggagggtgcctaatccaagtctgcttttgatggaaaacacgtcgtgaaaatatcgtgggattccaattcgcgttatttagctggca |
100 |
Q |
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| T |
8718347 |
aacaacaaacaagaggagggggcctaatccaagtctgcttttgatggaaaacacgtcgtgaaaatatcgtgggattccaattcccgttatttagctggca |
8718446 |
T |
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| Q |
101 |
tttgtggattggtactggcctaatccaagtatgcatttcgaagaataagtgttggctgttgttgtggaatttgtgttggcatttttatttgttgtcattg |
200 |
Q |
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| T |
8718447 |
tttgtggattggt---ggcctaatccaagtctgcatttcgacgaataagtgttggctgttgttgtggaatttgtgttggcatttttatttgttgtcattg |
8718543 |
T |
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| Q |
201 |
ataatattctataaggacgtatggagtttgagggaggcaatttgtatttcataggagtcatggtccatctaagcatcattaagaggttttg |
291 |
Q |
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| T |
8718544 |
ataatattctataaggacatatggagtttgagggaggcgatttgtatttcataggagtcatggtccatctaagcatcattaagaggttttg |
8718634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 44 - 292
Target Start/End: Original strand, 8672078 - 8672323
Alignment:
| Q |
44 |
atggaaaacacgtcgtgaaaatatcgtgggattccaattcgcgttatttagctggcatttgtggattggtactggcctaatccaagtatgcatttcgaag |
143 |
Q |
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| T |
8672078 |
atgggaaacacgtcgtgaaaatatcgtgggattccaattcgcgttatttagcctgcatttaaggattggt---ggcctaatcctagtctgcatttcgacg |
8672174 |
T |
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| Q |
144 |
aataagtgttggctgttgttgtggaatttgtgttggcatttttatttgttgtcattgataatattctataaggacgtatggagtttgagggaggcaattt |
243 |
Q |
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| T |
8672175 |
aataagtgttagctgttgttgtggaatttgtgttggcatttttatttgttgtcgttgacaatattctataaggacatatggagtttgagggaggcaattt |
8672274 |
T |
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| Q |
244 |
gtatttcataggagtcatggtccatctaagcatcattaagaggttttgt |
292 |
Q |
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| T |
8672275 |
gtatttcataggagtcatggtccatctaagaaccattaagaggttttgt |
8672323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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