View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18361_low_21 (Length: 295)
Name: NF18361_low_21
Description: NF18361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18361_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 284
Target Start/End: Complemental strand, 30352455 - 30352189
Alignment:
| Q |
23 |
aaagctaacacagacttacaagtctacaaac-----atcaaaagcttgtcacacttccacnnnnnnnnncacaacaagacctccaccaggaggccgccta |
117 |
Q |
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| T |
30352455 |
aaagctaacccagacttacaagtctacaaactcaacatcaaaagcttgtcacacttccacaaaaaaaaacacaacaagacctccaccaggaggccgcctg |
30352356 |
T |
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| Q |
118 |
agataaaacttcttattccacctctagaaaacaatgattcatctccccaatacatcgacaaggactccaagaccattcataaaacaaaaaatggggcata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30352355 |
agataaaacttcttattccacctctagaaaacaatgattcatctccccaatacatcgacaaggactccaagaccattcataaaacaaaaaatggggcata |
30352256 |
T |
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| Q |
218 |
ttcaaccaactcaaaccccaccttcacgacgcatttttgatctcatccactactttcaattgttctt |
284 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
30352255 |
ttcaaccgactcaaaccccaccttcacgacgcctttttgatctcatccactactttcaaatgttctt |
30352189 |
T |
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