View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18361_low_24 (Length: 281)
Name: NF18361_low_24
Description: NF18361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18361_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 13946712 - 13946874
Alignment:
| Q |
1 |
tgcaccaccgccccgttctccactaccgggaaagtttatgatgtttccgctgccgcctccatttgtgtttccaccaggcttataccagattccaaatccg |
100 |
Q |
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| T |
13946712 |
tgcaccaccgccccgttttccactaccgggaaagtttatgatgtttccgccgccgcctccatttgtgtttccaccaggcttataccagattccgaatccg |
13946811 |
T |
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| Q |
101 |
cttggccatactccataaccatcaactataatatttgtctttgattttcttgtttcaccaact |
163 |
Q |
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| T |
13946812 |
cttggccatactccataaccatcagctataatatttgtctttgattttcttgtttcaccaact |
13946874 |
T |
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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 223 - 266
Target Start/End: Original strand, 13946932 - 13946975
Alignment:
| Q |
223 |
atggaaactagttttattttaatatacattgtttcccttctttg |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13946932 |
atggaaactagttttattttaatatacattgtttcccttctttg |
13946975 |
T |
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