View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18361_low_26 (Length: 243)
Name: NF18361_low_26
Description: NF18361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18361_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 45315038 - 45315242
Alignment:
| Q |
1 |
aaaatgaattatggggatctgagtatatagctgaggtgatgaggacctgcatgctatgtgctttttcaagaaggggtggcttacgtacattcacatggtt |
100 |
Q |
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| T |
45315038 |
aaaatgaattatggggatctgagtatatagctgaggtgatgaggacctgcatgctatgtgctttttcaagaaggggtggcttacatacattcacatg-tt |
45315136 |
T |
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| Q |
101 |
aatctggcagagtctggtcgattggaccatggtcctagctccatttctgtcctttcgtatgtcctcatcatcacacaatgctaaattctggtgtttgtga |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
45315137 |
aatccggcagagtctggtcgattggaccatggtcctagctccatttctgtcctttcgtatgtcctcatcgtcacataatgctaaattctggtgtttgtga |
45315236 |
T |
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| Q |
201 |
tatctt |
206 |
Q |
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|||||| |
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| T |
45315237 |
tatctt |
45315242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 27760996 - 27761186
Alignment:
| Q |
18 |
tctgagtatatagctgaggtgatgaggacctgcatgctatgtgctttttcaagaaggggtggcttacgtacattcacatggttaatctggcagagtctgg |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||| |||| |
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| T |
27760996 |
tctgagtatatagctgaagtgatgaggacctgcatgctatgtgctttttcaagaagggatagcttacatacattcacatggttaatccagcagaatctga |
27761095 |
T |
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| Q |
118 |
tcgattggaccatggtcctagctccatttctgtcctttcgtatgtcctcatcatcacacaatgctaaattctggtgtttgtgatatcttca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
27761096 |
cagattggaccatggtcctagctccatttctgtccttttatgtgtcctcatcgtcacataatgctaaattctggtgtttgtgatatcttca |
27761186 |
T |
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