View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18361_low_28 (Length: 201)
Name: NF18361_low_28
Description: NF18361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18361_low_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 40 - 187
Target Start/End: Complemental strand, 55504706 - 55504559
Alignment:
| Q |
40 |
aggttggagaatctatgaaagagacgaaggaggaaagggcgggttggattatagacagtgagtgagaatcgaagatcattgatgatcgagaataactgtt |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55504706 |
aggttggagaatctatgaaagagacgaaggaggaaagggcgggttgaattatagacagtgagtgagaatcgaagatcattgatgatcgagaataactgtt |
55504607 |
T |
|
| Q |
140 |
ttgagaccatggatacagccttcaggtagctacaattgttgtcatcgt |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
55504606 |
ttgagaccatggatacagccttcaggtagctataattgttgtcgtcgt |
55504559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 51 - 187
Target Start/End: Complemental strand, 55505069 - 55504933
Alignment:
| Q |
51 |
tctatgaaagagacgaaggaggaaagggcgggttggattatagacagtgagtgagaatcgaagatcattgatgatcgagaataactgttttgagaccatg |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55505069 |
tctatgaaagagacgaaggaggaaagggcgggttgaattatagacagtgagtgagaatcgaagatcattgatgatcgagaataactgttttgagaccatg |
55504970 |
T |
|
| Q |
151 |
gatacagccttcaggtagctacaattgttgtcatcgt |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
55504969 |
gatacagccttcaggtagctacaattgttgtcgtcgt |
55504933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 548226 - 548299
Alignment:
| Q |
73 |
aaagggcgggttggattatagacagtgagtgagaatcgaagatcattgatgatcgagaataactgttttgagac |
146 |
Q |
| |
|
|||||||| ||| |||||||||| |||||||||| | |||||| |||| |||| |||| |||||||||||||| |
|
|
| T |
548226 |
aaagggcgtgtttgattatagactgtgagtgagagtggaagattattggtgatggagagaaactgttttgagac |
548299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 513525 - 513447
Alignment:
| Q |
68 |
ggaggaaagggcgggttggattatagacagtgagtgagaatcgaagatcattgatgatcgagaataactgttttgagac |
146 |
Q |
| |
|
||||||||||| ||||| || || ||||||||| |||||||| |||| ||| |||| |||| ||||||||||||||| |
|
|
| T |
513525 |
ggaggaaagggagggtttgaatacggacagtgagagagaatcggagattgttggtgatggagagtaactgttttgagac |
513447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 32268750 - 32268822
Alignment:
| Q |
80 |
gggttggattatagacagtgagtgagaatcgaagatcattgatgatcgagaataactgttttgagaccatgga |
152 |
Q |
| |
|
||||||||| |||||| ||||| |||||||||||| ||| |||| |||| ||||||||| ||||| ||||| |
|
|
| T |
32268750 |
gggttggatcatagactgtgagagagaatcgaagacggttggtgatggagagtaactgtttggagacgatgga |
32268822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University