View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18361_low_4 (Length: 715)
Name: NF18361_low_4
Description: NF18361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18361_low_4 |
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| [»] scaffold0186 (1 HSPs) |
| | |
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| [»] scaffold0294 (1 HSPs) |
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| [»] scaffold0369 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 7 - 699
Target Start/End: Original strand, 12543323 - 12544013
Alignment:
| Q |
7 |
gagagatgaagtttttgctgatgtgaaaatttgggagaagagtaaatcctagaatctaaagcagctatcacgtgccaatctcttttatattttctttttc |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12543323 |
gagagatgaagtttttgctgatgtgaaaatttgggagaagagtaaaccctagaatctaaagcagctatcacgtgccaatctcttttatattttctttttc |
12543422 |
T |
|
| Q |
107 |
cttttcttgaattcatgtgtttacacgcatggcnnnnnnnnnnnnnn---ataaacaaacagtaatatacacacgtggcgtgccacatcctttaatgaag |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||||||||||||||||||| ||| |||||||||||| | ||||||||||| |
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|
| T |
12543423 |
cttttcttgaattcatgtgtttacacgcctgccttttttttttattttttataaacaaacagtaatatatacatgtggcgtgccacgttctttaatgaag |
12543522 |
T |
|
| Q |
204 |
tgccaaataagcattgattcggtgaaaattgcaaaggggttaattcattagggggccaaannnnnnnnnnnnnnaatagggatcaaaatcgcaacatttt |
303 |
Q |
| |
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|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| |
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| T |
12543523 |
tgtcaaataagcattgatttggtgaaaattgcaaaggggttaattcattagggggccaaatttttcatttttttaatagggaccaaaatcgtaacatttt |
12543622 |
T |
|
| Q |
304 |
aaaacataggaaccaaag-tacacttaagtcttgtttataccacatgatttggaaatttgggtatgggtaatgaaatgaaaagcaatatcacatcttgat |
402 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12543623 |
aaaacttaggaaccaaagatacacttaagtcttgtttataccacaggatttggaaatttgggtatgggtaatgaaatgaaaagcgatatcacatcttgat |
12543722 |
T |
|
| Q |
403 |
caaaggtacatgctctgttgttgaaatgcttaagaaaatttgttaaagtagatagatttgcannnnnnnnnnnnnnnnccttttcctgaaaatctttatc |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12543723 |
caaaggtacatgctctgttgttgaaatgcttaagaaaatttgttaaagtagatagatttgcatttttttttt------ccttttcctgaaaatctttatc |
12543816 |
T |
|
| Q |
503 |
catccaaagatgttatggaataacttcaaaaatgttctttgtaaaagatatacaacaagcaaacggttaaatgttgcacatgatgtataacggaagaaaa |
602 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12543817 |
catccaaagatgttatggaataacttaaaaaatgttttttgtaaaagatatacaacaagcaaacggttaaatgttgcacatgatgtataacggaagaaaa |
12543916 |
T |
|
| Q |
603 |
ttcaaactatttcaatagttgaagccaatgatgcttatgaaaaagctacatggtttgatgctaacaacacaacaagcatgcttgaaaatgattattc |
699 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12543917 |
ttcaaactatttcaatagttgaagccaataatgcttatgaaaaagctacatggtttgatgctaacaacacaacaagcatgcttgaaaatgattattc |
12544013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 597 - 699
Target Start/End: Complemental strand, 15363136 - 15363034
Alignment:
| Q |
597 |
agaaaattcaaactatttcaatagttgaagccaatgatgcttatgaaaaagctacatggtttgatgctaacaacacaacaagcatgcttgaaaatgatta |
696 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||| ||||||||||||| |||||| |
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|
| T |
15363136 |
agaaaattcaaactatttcaatagttgatgccaatgatgcttatgagaaagctacatggtttgattctaacaacaaaaccagcatgcttgaaagtgatta |
15363037 |
T |
|
| Q |
697 |
ttc |
699 |
Q |
| |
|
||| |
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|
| T |
15363036 |
ttc |
15363034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 597 - 699
Target Start/End: Complemental strand, 15364475 - 15364373
Alignment:
| Q |
597 |
agaaaattcaaactatttcaatagttgaagccaatgatgcttatgaaaaagctacatggtttgatgctaacaacacaacaagcatgcttgaaaatgatta |
696 |
Q |
| |
|
|||||||| || |||||||||||| |||||||||||||| |||||| |||||||| |||||||| ||| ||||||| |||| |||||||||| |||||| |
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| T |
15364475 |
agaaaattgaacctatttcaatagctgaagccaatgatggttatgagaaagctacgcggtttgattctagcaacacatcaagaatgcttgaaagtgatta |
15364376 |
T |
|
| Q |
697 |
ttc |
699 |
Q |
| |
|
||| |
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|
| T |
15364375 |
ttc |
15364373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 51684553 - 51684487
Alignment:
| Q |
168 |
atatacacacgtggcgtgccacatcctttaatgaagtgccaaataagcattgattcggtgaaaattg |
234 |
Q |
| |
|
||||||||| ||||| |||||| ||||||||||||||| ||||| ||| |||| | ||| ||||||| |
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| T |
51684553 |
atatacacatgtggcctgccacctcctttaatgaagtgacaaatcagcgttgacttggtcaaaattg |
51684487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 18154676 - 18154613
Alignment:
| Q |
171 |
tacacacgtggcgtgccacatcctttaatgaagtgccaaataagcattgattcggtgaaaattg |
234 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| |||||||||||| |||||| ||| ||||||| |
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| T |
18154676 |
tacacatgtggcatgccacatcctttaatgaaatgccaaataagctttgatttggttaaaattg |
18154613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 52840517 - 52840583
Alignment:
| Q |
167 |
aatatacacacgtggcgtgccacatcctttaatgaagtgccaaataagcattgattcggtgaaaatt |
233 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| |||||||| |||||| |||| ||||| |||||| |
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|
| T |
52840517 |
aatatacacatgtggcgtgccaaatcctttaatcaagtgccacataagcgttgactcggtcaaaatt |
52840583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 23802 - 23869
Alignment:
| Q |
167 |
aatatacacacgtggcgtgccacatcctttaatgaagtgccaaataagcattgattcggtgaaaattg |
234 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| |||||||| |||| | |||| ||||| ||||||| |
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|
| T |
23802 |
aatatacacatgtggcgtgccaaatcctttaatcaagtgccacataaacgttgactcggtcaaaattg |
23869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 5355 - 5417
Alignment:
| Q |
171 |
tacacacgtggcgtgccacatcctttaatgaagtgccaaataagcattgattcggtgaaaatt |
233 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| |||||||||||| |||| | ||| |||||| |
|
|
| T |
5355 |
tacacatgtggcatgccacatcctttaatgaaatgccaaataagctttgacttggtcaaaatt |
5417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 19750492 - 19750541
Alignment:
| Q |
171 |
tacacacgtggcgtgccacatcctttaatgaagtgccaaataagcattga |
220 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
19750492 |
tacacatgtggcatgccacatcctttaatgaaatgccaaataagctttga |
19750541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 19789314 - 19789265
Alignment:
| Q |
171 |
tacacacgtggcgtgccacatcctttaatgaagtgccaaataagcattga |
220 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
19789314 |
tacacatgtggcatgccacatcctttaatgaaatgccaaataagctttga |
19789265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 9051081 - 9051049
Alignment:
| Q |
282 |
gggatcaaaatcgcaacattttaaaacatagga |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
9051081 |
gggatcaaaatcgcaacattttaaaacatagga |
9051049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0369 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0369
Description:
Target: scaffold0369; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 13375 - 13326
Alignment:
| Q |
171 |
tacacacgtggcgtgccacatcctttaatgaagtgccaaataagcattga |
220 |
Q |
| |
|
|||||||||||||||||||||| |||||| || || ||||||||| |||| |
|
|
| T |
13375 |
tacacacgtggcgtgccacatcgtttaataaactgtcaaataagcgttga |
13326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 278 - 307
Target Start/End: Original strand, 6798157 - 6798186
Alignment:
| Q |
278 |
aatagggatcaaaatcgcaacattttaaaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6798157 |
aatagggatcaaaatcgcaacattttaaaa |
6798186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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