View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18361_low_5 (Length: 549)
Name: NF18361_low_5
Description: NF18361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18361_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 232 - 533
Target Start/End: Original strand, 20714770 - 20715071
Alignment:
| Q |
232 |
taagataaaagtataacaagtaaaatagaaaatgtattgataacgagaatgtatgtttacatcaaaggttacgccttttttgtgtggatactaactaatt |
331 |
Q |
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| T |
20714770 |
taagataaaagtataacaagtaaaatagaaaatgtatcgataacgagaatgtatgtttacatcaaaggttacgccttttttgtgtcgatactaactaatt |
20714869 |
T |
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| Q |
332 |
acatctctaatattaaatttgagcaaccctcatgatatatataatcaactcaagaatttttgcagcatgagctccatagtcaaagaacttggaattgtag |
431 |
Q |
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| T |
20714870 |
acatctctaatattaaatttgagcaaccctcatgatatatataatcaactcaagaatttttgcagcctgaactccatagtcaaagaacttggaattgtag |
20714969 |
T |
|
| Q |
432 |
ctcacactcgagagaagacattgaagccatatggttaagaaagcaagaggctattgtcaaaagagaccgcatgaggcaatactcttcttcgcaaaaggta |
531 |
Q |
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| T |
20714970 |
ctcacactcgagagaagacattgaagccatatggttaagaaagcaagaggctattgtcaaaagagaccgcatgaggcaatactcttcttcgcaaaaggta |
20715069 |
T |
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| Q |
532 |
at |
533 |
Q |
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|| |
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| T |
20715070 |
at |
20715071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 20714600 - 20714771
Alignment:
| Q |
18 |
agaactttgaagaatattccctcaaatgcaaaaactgagaagcaaatcgaggaaagaagcagccatacaaaggaagaaaactacgaaaatgaccatataa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20714600 |
agaactttgaagaatattccctcaaatgcaaaaactgagaagcaaatcgaggaaagaagcagccatacaaaggaagaaaactacgaaaatgaccatataa |
20714699 |
T |
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| Q |
118 |
aacagtttccaaagcaaaagaaaaagatagaagagaatgaacttaaggtaaatatgtcacatttatgttata |
189 |
Q |
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| T |
20714700 |
aacagtttccaaagcaaaagaaaaagatagaagagaatgaacttaaggtaaatatatcacatttatgttata |
20714771 |
T |
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