View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18361_low_7 (Length: 467)

Name: NF18361_low_7
Description: NF18361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18361_low_7
NF18361_low_7
[»] chr1 (3 HSPs)
chr1 (18-459)||(38813793-38814234)
chr1 (331-449)||(38818506-38818624)
chr1 (330-454)||(38820731-38820855)


Alignment Details
Target: chr1 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Original strand, 38813793 - 38814234
Alignment:
Q  18 acaaacttcttcagcacacatgggttatgtgggatcgtttgagctgaatggagtacacatcaagactcgagcaacatccgatgagcaaaagattgagaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  38813793 acaaacttcttcagcacacatgggttatgtgggatcgtttgagctgaatggagtacacatcaagaccagagcaacatccgatgagcaaaagattgagaat 38813892  T
Q  118 catataagatcgttcttgcatcgttctaacagtcatcgaaccaaagttatcgggcttgatgctgaatggcttctgttacatggcacggagccaggaacag 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38813893 catataagatcgttcttgcatcgttctaacaatcatcgaaccaaagttatcgggcttgatgctgaatggcttctgttacatggcacggagccaggaacag 38813992  T
Q  218 ttaccaaatccaaatgtgcaaccctgcagctctgtgatggacactcgtgtcttatcattcacctaaatggtttcaattgctttgagagttgggcatatga 317  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38813993 ttaccaaatccaaatgtgcaacactgcagttctgtgatggacactcgtgtcttatcattcacctaaatggtttcaattgctttgagagttgggcatatga 38814092  T
Q  318 ttctgtccacaaatcactgcttaattttcttcgtctcccaaatgttacatttgttggagttggaatcaaagagaatttggctaagttggagaagcagtat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38814093 ttctgtccacaaatcactgcttaattttcttcgtctcccaaatgttacatttgttggagttggaatcaaagagaatttggctaagttggagaagcagtat 38814192  T
Q  418 ggatttggatgtagaaatgctgttgaacttggaccctatgct 459  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  38814193 ggatttggatgtagaaatgctgttgaacttggaccctttgct 38814234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 331 - 449
Target Start/End: Original strand, 38818506 - 38818624
Alignment:
Q  331 tcactgcttaattttcttcgtctcccaaatgttacatttgttggagttggaatcaaagagaatttggctaagttggagaagcagtatggatttggatgta 430  Q
    ||||| ||||| ||||||||| | ||||||||||| ||||||||||||||||||||||| ||| |||| |||||||| |   | |||||  |||||||||    
T  38818506 tcactacttaactttcttcgtatgccaaatgttacctttgttggagttggaatcaaagacaatgtggccaagttggaaacatactatgggattggatgta 38818605  T
Q  431 gaaatgctgttgaacttgg 449  Q
    |||||||||| ||||||||    
T  38818606 gaaatgctgtggaacttgg 38818624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 454
Target Start/End: Original strand, 38820731 - 38820855
Alignment:
Q  330 atcactgcttaattttcttcgtctcccaaatgttacatttgttggagttggaatcaaagagaatttggctaagttggagaagcagtatggatttggatgt 429  Q
    |||| ||||||||||||||||||| ||| ||  ||| |||||||| ||||| |||||  | |||||||||||  | |||||| | |||||  || ||||     
T  38820731 atcattgcttaattttcttcgtcttccagattatacctttgttggtgttggtatcaatcataatttggctaaacttgagaaggaatatggggttagatgc 38820830  T
Q  430 agaaatgctgttgaacttggaccct 454  Q
    ||||||||||| |||||||||||||    
T  38820831 agaaatgctgtggaacttggaccct 38820855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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