View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18361_low_9 (Length: 441)
Name: NF18361_low_9
Description: NF18361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18361_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Original strand, 1261801 - 1262210
Alignment:
| Q |
19 |
ctattaattcacaaacacctacctccaagatacaactttgcaaggaattcagttccataggagtaacacttgtggaggtaagtcttgtccaaatgctttg |
118 |
Q |
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| T |
1261801 |
ctattaattcacaaacacctacctccaagatacaactttgcaaggaattcagttccataggagtaacacttgtggaggtaagtcttgtccaaatgctttg |
1261900 |
T |
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| Q |
119 |
tgatgaagttagagaataaattttcttaatgagtctcaaaagttaataaatgcagggagaacttgagcataatcaaattgtggcagttattaaacaagta |
218 |
Q |
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| T |
1261901 |
tgatgaagttagagaataaattttcttaattagtctcaaaaattaataaatgcagggagaacttgagcataatcaaattgtggcagttattaaacaagca |
1262000 |
T |
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| Q |
219 |
gacattgtgatatgtacttttgcttatcctcaagtgatggagcaactcaaaattattgaagctgtcaaagttgctggtaatattaaggtaatgaatattt |
318 |
Q |
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| T |
1262001 |
gacattgtgatatgtacttttgcttatcctcaagtgatggagcaactcaaaattattgaagctgtcaaagttgctggtaatattaaggtaatgaatattt |
1262100 |
T |
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| Q |
319 |
ccaaattcatatatatctataaggaaagtgtttctcctaaaaatagatgaaattaccccccttctcttttgattttcttttcaatcattgatcgataatt |
418 |
Q |
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| T |
1262101 |
ccaaattcatatatatttataaggaaagtgtttctcctaaaaatagatgaaattaccccccttctcttttgattttcttttcaatcactgattgataatt |
1262200 |
T |
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| Q |
419 |
attacttcct |
428 |
Q |
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| T |
1262201 |
attacttcct |
1262210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 169 - 307
Target Start/End: Complemental strand, 1338598 - 1338460
Alignment:
| Q |
169 |
tgcagggagaacttgagcataatcaaattgtggcagttattaaacaagtagacattgtgatatgtacttttgcttatcctcaagtgatggagcaactcaa |
268 |
Q |
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| T |
1338598 |
tgcagggagaacttgagcatgaccagattgtgaaagtgattaagcaagtagacattgtgatatgtacctttccatacccacaagtgttggagcaactcaa |
1338499 |
T |
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| Q |
269 |
aattattgaagctgtcaaagttgctggtaatattaaggt |
307 |
Q |
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| T |
1338498 |
aattatagatgctattaaagttgctggcaatatcaaggt |
1338460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 169 - 308
Target Start/End: Complemental strand, 1323859 - 1323720
Alignment:
| Q |
169 |
tgcagggagaacttgagcataatcaaattgtggcagttattaaacaagtagacattgtgatatgtacttttgcttatcctcaagtgatggagcaactcaa |
268 |
Q |
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| T |
1323859 |
tgcagggagaacttgaacatgaccagattgttagagtcataaaagaagcagacattgtgatatgtacctttccatatccgcaagtgatggagcaactcaa |
1323760 |
T |
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| Q |
269 |
aattattgaagctgtcaaagttgctggtaatattaaggta |
308 |
Q |
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| T |
1323759 |
aattgtagatgctatcaaagttgctggtaatatcaaggta |
1323720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 1338769 - 1338684
Alignment:
| Q |
19 |
ctattaattcacaaacacctacctccaagatacaactttgcaaggaattcagttccataggagtaacacttgtggaggtaagtctt |
104 |
Q |
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||||||||||| |||| |||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| |||| ||||||| |
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| T |
1338769 |
ctattaattcaaaaactcctaactccaagatacaactttgcaaggaattcaattccattggagtaacacttgttgaggcaagtctt |
1338684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 1324210 - 1324130
Alignment:
| Q |
24 |
aattcacaaacacctacctccaagatacaactttgcaaggaattcagttccataggagtaacacttgtggaggtaagtctt |
104 |
Q |
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| T |
1324210 |
aattcacaaacttctccctcaaagatacaactttgcaaagaattcaattccattggagcaactcttgtggaggtaagtctt |
1324130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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