View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18362_high_1 (Length: 705)
Name: NF18362_high_1
Description: NF18362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18362_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 597; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 18 - 690
Target Start/End: Original strand, 51222977 - 51223631
Alignment:
| Q |
18 |
aaataagtggaggtgtggtgttcttccatgcctaggcttgtgagatgctgttaaatggttctgaacatcaaatcagttcaactgatgcaacgtatgagat |
117 |
Q |
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| T |
51222977 |
aaataagtggaggtgtggtgttcttccatgcctaagcttgtgagatgctgttaaatggttctgaacatcaaatcagttcaactgatgcaacgtatga--t |
51223074 |
T |
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| Q |
118 |
gatcacaggcagttacttgtagaagaagttatcagtgagtgaagcttgtgtagattcaggaacacattagataggtggacattagtgtgaaaatatgcat |
217 |
Q |
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| T |
51223075 |
gatcacaggcagttacttgtagaagaagttatcagtgagtgaagcttgtgtagattcaggaacacattagataggtggacattagtgtgaaaatatgcat |
51223174 |
T |
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| Q |
218 |
ttaaacgcgacgataagtgttcaacattgttcagagcaaagtttatgtaagtggtggtttcaaatgtgaaggcaaggaagaccatgaaattcggctttaa |
317 |
Q |
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| T |
51223175 |
ttaaacgcgacgataagtgttcaacattgttcagagcaaagtttatgtaagtggtggtttcaaatgtgaaggcaaggaagaccatgaaattcagctttaa |
51223274 |
T |
|
| Q |
318 |
aagttgcttcaattgttaaattgagtttcagagtttttaagtatcgatttatagtagaccacttataaaaatagttcatagcagtagaatctgtatggtg |
417 |
Q |
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| T |
51223275 |
aagttgcttcaattgttaaattgagtttcagagtttttaagtatcgatttatagtagaccacttataaaaatagttcatagcagtagaatctgtatggtg |
51223374 |
T |
|
| Q |
418 |
ttaaatgtcaatatttgtcactctaaacattggaagaacttaattatcatttatttatttgaatttatgcttagttataaatacttgtgtaagtatctat |
517 |
Q |
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| T |
51223375 |
ttaaatgtcaatatttgtcactctaaacattggaagaacttaattatcatttatttatttgaatttatgcttagttataaa----------------tat |
51223458 |
T |
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| Q |
518 |
ttcagcttctaaacatttcttatgattaagaaggttgaattgacaggaaatatatgttgcatacattaaattattaatattcagtgggaaacacatatgt |
617 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51223459 |
ttcagcttctaaacatttcttatgattaagaaggttggattgacaggaaatatatgttgcatacattaaattattaatattcagtgggaaacacatatgt |
51223558 |
T |
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| Q |
618 |
atcgttgtggattgacaaattgattcttagaagctgccaattcaattctttcccatctcttttttctattcat |
690 |
Q |
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| T |
51223559 |
atcgttgtggattgacaaattgattcttagaagctgccaattcaattctttcccatctcttttttctattcat |
51223631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 51220487 - 51220620
Alignment:
| Q |
18 |
aaataagtggaggtgtggtgttct----tccatgcctaggcttgtgagatgctgttaaatggttctgaacatcaaatcagttcaactgatgcaacgtatg |
113 |
Q |
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|||||||||||||||||||||||| ||||||| || |||| | || | |||||||| |||| |||||||||||||||||| ||||| ||| ||| |
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| T |
51220487 |
aaataagtggaggtgtggtgttctttcttccatgcttaagcttataggaggttgttaaattattctcaacatcaaatcagttcaattgatggaac--atg |
51220584 |
T |
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| Q |
114 |
agatgatcacaggcagttacttgtagaagaagttat |
149 |
Q |
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| T |
51220585 |
cgatgatcacaaacaattacttgcatcagaagttat |
51220620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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