View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18362_high_3 (Length: 578)
Name: NF18362_high_3
Description: NF18362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18362_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 12 - 558
Target Start/End: Complemental strand, 49911106 - 49910549
Alignment:
| Q |
12 |
aagcaaaggaatgatatccaagctcagctaagagcatgtcccagtcccattgtaaatgcaaaagcaaaacaaagtcttcaatcccaatc-ccaaagttga |
110 |
Q |
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| T |
49911106 |
aagcaaaggaatgatatccaagctcagctaagagcatgtcccagtcccattgtaaatgcaaaagcaaaacaaagtcttcaatcccaatttccaaagttga |
49911007 |
T |
|
| Q |
111 |
atgcaatgttattctcatcctcctctcccatttccaaaacaacnnnnnnngatatactaatactacttgtacaagactatactcatggattgatatatca |
210 |
Q |
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| T |
49911006 |
atgcaatgttattctcatcctcctctcccatttccaaaacaacaaaaaaagatatactaatactacttgtacaagactatactcatggattgatatatca |
49910907 |
T |
|
| Q |
211 |
tgaggagataattaaacatgcagccagctagctcacctcagctcagctgctcttttcaagcataaaagcactgc----nnnnnnnnnnnnngctactctg |
306 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
49910906 |
tgaggagataattaaacatgcaaccagctagctcacctcagctcagctgctcttttcaagcataaaagcactgctatatatatatatatatgcta--ctg |
49910809 |
T |
|
| Q |
307 |
ttgttgaatgaa--------ttgaatttagctggcattttcaaatacaaacacactttttgtaattccctccctctccctcctcaacccactcactctca |
398 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49910808 |
ttgttgaatgaatgaatgaattgaatttagctggcattttcaaatacaaacacactttttgtaattccctccctctccctcctcaacccactcactctca |
49910709 |
T |
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| Q |
399 |
ttctcactgccagccaagagtgaattagcaaggctgggacacccacaccaactgtattctgtactacacacccaacctacgcacgcagtttttgcttttc |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49910708 |
ttctcactgccagccaagagtgaattagcaaggctgggacacccacactaacagtattctgtactacacacccaacctacgcacgcagtttttgcttttc |
49910609 |
T |
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| Q |
499 |
tctccaaaacattaacaaccaacgtttcttttgtctctcctctactattccgtatacact |
558 |
Q |
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| T |
49910608 |
tctccaaaacattaacaaccaacgtttcttttgtctctcctccactattccgtatacact |
49910549 |
T |
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