View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18362_high_4 (Length: 374)
Name: NF18362_high_4
Description: NF18362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18362_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 12 - 357
Target Start/End: Original strand, 18660918 - 18661263
Alignment:
| Q |
12 |
atgaatgttcgaataatacaactccataaagaacttggcacacttttggaaacacagtgcaaacatataaccatgcctcaactcaaagccagaagttatt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18660918 |
atgaatgttcgaataatacaactccataaagaacttggcacacttttggaaacacagtgcaaacatataaccatgcctcaactcaaagccagaagttatt |
18661017 |
T |
|
| Q |
112 |
gcaacttcagcacaatcatgaggtgacacatcgaattttagcccgtgtattgtttttaatctttaaatctcagcaccaacaaggtgtgttgttttacaca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18661018 |
gcaacttcagcacaatcatgaggtgacacatcgaatcttagcccgtgtattgtttttaatctttaaatctcagcaccaacaaggtgtgttgttttacaca |
18661117 |
T |
|
| Q |
212 |
tgacaagtcatacaaaattataagacaatctgcatactatatgctagctagctatgacacaaggaagtaattctgactataaaagaaataggttaatttg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18661118 |
tgacaagtcatacaaaattataagacaatctgcataccatatgctagctagctatgacacaaggaagtaattctgactataaaagaaataggttaatttg |
18661217 |
T |
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| Q |
312 |
agttctgttaaatgaagatatgcttgctgacagtcaaaacagttgt |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18661218 |
agttctgttaaatgaagatatgcttgctgacagtcaaaacagttgt |
18661263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 12 - 357
Target Start/End: Complemental strand, 15082962 - 15082617
Alignment:
| Q |
12 |
atgaatgttcgaataatacaactccataaagaacttggcacacttttggaaacacagtgcaaacatataaccatgcctcaactcaaagccagaagttatt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15082962 |
atgaatgttcgaataatacaactccataaagaacttggcacacttttggaaacacagtgcaaacatataaccatgcctcaactcaaagccagaagttatt |
15082863 |
T |
|
| Q |
112 |
gcaacttcagcacaatcatgaggtgacacatcgaattttagcccgtgtattgtttttaatctttaaatctcagcaccaacaaggtgtgttgttttacaca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15082862 |
gcaacttcagcacaatcatgaggtgacacatcgaatcttagcccgtgtattgtttttaatctttaaatttcagcaccaacaaggtgtgttgttttacaca |
15082763 |
T |
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| Q |
212 |
tgacaagtcatacaaaattataagacaatctgcatactatatgctagctagctatgacacaaggaagtaattctgactataaaagaaataggttaatttg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15082762 |
tgacaagtcatacaaaattataagacaatctgcataccatatgctagctagctatgacacaaggaagtaattctgactataaaagaaataggttaatttg |
15082663 |
T |
|
| Q |
312 |
agttctgttaaatgaagatatgcttgctgacagtcaaaacagttgt |
357 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15082662 |
agttctgttaaatgaagatatgcttgctgacagtcaaaacagttgt |
15082617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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