View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18362_low_2 (Length: 646)
Name: NF18362_low_2
Description: NF18362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18362_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 6 - 631
Target Start/End: Original strand, 25718496 - 25719121
Alignment:
| Q |
6 |
cagagacaaatcgtaaagggaccattagcgccactttacttaataataatacttctgttaaactattttgattttagtagctaattgatactagcttttc |
105 |
Q |
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| T |
25718496 |
cagagacaaatcgtagagggaccattagcgccactttaattaataataatacttctgttaaactattttgaatttagtagctaattgatattagcttttt |
25718595 |
T |
|
| Q |
106 |
acgtaaattatagtgaaaggcattgtcgacgtcctcaatgagtcgtccagctcatgaaaacgttgaaacaaaagagatgaatagcagaagtttgtcttct |
205 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25718596 |
acgtaaattacagtgaaaggcattgtcgacgtcctcaatgagttgtccagctgatgaaaacgttgaaacaaaagagatggatagcagaagtttgtcttct |
25718695 |
T |
|
| Q |
206 |
tcacaaggccaggaaccatacgcgcacaaggttggaattcctccaaaacaaaacctcttcaaggaattccaatacactgtaaaagaaacattcttctctg |
305 |
Q |
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| T |
25718696 |
tcacaaggccaggaaccatacgcgcacaaggttggaattcctccaaaacaaaacctcttcaaggaattccaatacactgtaaaagaaacattcttctctg |
25718795 |
T |
|
| Q |
306 |
atgatcctctaaggcctttcaaggatcagacgaagtcccgtaagttaattctgggaattgaagccatattccctatacttagttggggaagaacttatac |
405 |
Q |
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| T |
25718796 |
acgatcctctaaggtctttcaaggatcagacgaagtcccgtaagttaattctgggaattgaagccatattccctatacttagttggggaagaacttatac |
25718895 |
T |
|
| Q |
406 |
cctccaaaagtttagaggggaccttattgccggtttaactattgcaagtctctgcattcctcaggtaaatttactttaaattgtttattttgagctttta |
505 |
Q |
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| T |
25718896 |
cctccaaaagtttagaggggaccttattgccggtttaactattgctagtctctgcattcctcaggtaaatttactttaaattgcttattttgaggtttta |
25718995 |
T |
|
| Q |
506 |
aaaatcaacgagattgtatttttaattgattgctttccacttttttatgatttgctatatttggtctgtaaacaggacattggatactcaaagcttgcaa |
605 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||||||||||||||||||||||||| |
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| T |
25718996 |
aaaatcaatgagattgtatttttaattgattgctttccacttttttatgttttgctatgtttgttctgaaaacaggacattggatactcaaagcttgcaa |
25719095 |
T |
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| Q |
606 |
atttggctccacagtatggactgtgt |
631 |
Q |
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| T |
25719096 |
atttggctccacagtatggactgtgt |
25719121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 33297731 - 33297827
Alignment:
| Q |
231 |
acaaggttggaattcctccaaaacaaaacctcttcaaggaattccaatacactgtaaaagaaacattcttctctgatgatcctctaaggcctttcaa |
327 |
Q |
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|||| |||| ||||||||||||||| ||| | ||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
33297731 |
acaaagttgcaattcctccaaaacagaacttattcaaggaattccaatatactgtaaaagaaacattctttgctgatgatcctctaagatctttcaa |
33297827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 579 - 627
Target Start/End: Original strand, 33298059 - 33298107
Alignment:
| Q |
579 |
aggacattggatactcaaagcttgcaaatttggctccacagtatggact |
627 |
Q |
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|||| ||||||||||| ||||||||| ||||||| |||||||||||||| |
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| T |
33298059 |
aggatattggatactctaagcttgcacatttggcaccacagtatggact |
33298107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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