View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18362_low_5 (Length: 351)

Name: NF18362_low_5
Description: NF18362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18362_low_5
NF18362_low_5
[»] chr2 (4 HSPs)
chr2 (152-316)||(40894348-40894509)
chr2 (224-294)||(31621752-31621822)
chr2 (227-294)||(36668805-36668872)
chr2 (81-116)||(40894275-40894310)
[»] chr1 (5 HSPs)
chr1 (224-294)||(36574306-36574376)
chr1 (224-268)||(26529876-26529920)
chr1 (224-271)||(49917787-49917834)
chr1 (222-260)||(31437840-31437878)
chr1 (250-294)||(49917731-49917775)
[»] scaffold0115 (2 HSPs)
scaffold0115 (224-294)||(4680-4750)
scaffold0115 (224-294)||(12420-12490)
[»] chr5 (1 HSPs)
chr5 (240-294)||(16728156-16728210)
[»] chr6 (1 HSPs)
chr6 (207-260)||(11182661-11182714)
[»] chr8 (1 HSPs)
chr8 (222-270)||(17864408-17864456)
[»] chr4 (2 HSPs)
chr4 (222-270)||(31409694-31409742)
chr4 (222-270)||(52190062-52190110)


Alignment Details
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 152 - 316
Target Start/End: Original strand, 40894348 - 40894509
Alignment:
Q  152 aaatctttcttctatatggttatggagttttgggaaaatttaatttaannnnnnngttgatgatggcttggggttgttggattatggattttgagttgga 251  Q
    ||||| ||||||||| ||||||||||||||||||||||||||    ||       ||||||||| |||||||||||||||||||| ||||||||||||||    
T  40894348 aaatcgttcttctatttggttatggagttttgggaaaatttag---aatttttttgttgatgatagcttggggttgttggattatagattttgagttgga 40894444  T
Q  252 gatgaagatgaaaataaagatgataaatcaattcctattttgannnnnnngggattttatggatt 316  Q
    ||||||||||||||||||||||||||||||||||  |||||||       |||||||||||||||    
T  40894445 gatgaagatgaaaataaagatgataaatcaattcagattttgattttttggggattttatggatt 40894509  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 294
Target Start/End: Original strand, 31621752 - 31621822
Alignment:
Q  224 gttgttggattatggattttgagttggagatgaagatgaaaataaagatgataaatcaattcctattttga 294  Q
    |||||||| || ||||||||||||||||||||||||||||||||| || ||  |||||||| | |||||||    
T  31621752 gttgttgggttgtggattttgagttggagatgaagatgaaaataaggaggaagaatcaatttcgattttga 31621822  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 36668805 - 36668872
Alignment:
Q  227 gttggattatggattttgagttggagatgaagatgaaaataaagatgataaatcaattcctattttga 294  Q
    ||||| || ||||||||||||||||||||||||||||||||| || ||  |||||||| | |||||||    
T  36668805 gttgggttgtggattttgagttggagatgaagatgaaaataaggaggaagaatcaatttcgattttga 36668872  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 116
Target Start/End: Original strand, 40894275 - 40894310
Alignment:
Q  81 aagttgtcttatgagaaaaggatgaactttgattta 116  Q
    ||||||||||||||||||| ||||||||||||||||    
T  40894275 aagttgtcttatgagaaaatgatgaactttgattta 40894310  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 36574376 - 36574306
Alignment:
Q  224 gttgttggattatggattttgagttggagatgaagatgaaaataaagatgataaatcaattcctattttga 294  Q
    |||||||| || ||||||||||||||||||||||||||||||||| || ||  |||||||| | |||||||    
T  36574376 gttgttggcttgtggattttgagttggagatgaagatgaaaataaggaggaggaatcaatttcgattttga 36574306  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 26529920 - 26529876
Alignment:
Q  224 gttgttggattatggattttgagttggagatgaagatgaaaataa 268  Q
    |||||||| || |||||||||||||||||||||||||||||||||    
T  26529920 gttgttgggttgtggattttgagttggagatgaagatgaaaataa 26529876  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 49917834 - 49917787
Alignment:
Q  224 gttgttggattatggattttgagttggagatgaagatgaaaataaaga 271  Q
    |||||||| || |||||||||||||| |||||||||||||||||||||    
T  49917834 gttgttgggttgtggattttgagttgaagatgaagatgaaaataaaga 49917787  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 31437840 - 31437878
Alignment:
Q  222 gggttgttggattatggattttgagttggagatgaagat 260  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  31437840 gggttgttggattatgaattttgagttgaagatgaagat 31437878  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 49917775 - 49917731
Alignment:
Q  250 gagatgaagatgaaaataaagatgataaatcaattcctattttga 294  Q
    ||||||||||||||||||| || ||| |||||||||| |||||||    
T  49917775 gagatgaagatgaaaataaggaggatgaatcaattccgattttga 49917731  T

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Target: scaffold0115 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 4750 - 4680
Alignment:
Q  224 gttgttggattatggattttgagttggagatgaagatgaaaataaagatgataaatcaattcctattttga 294  Q
    |||||||| || |||||||||||||||||||||||||| |||||| || ||| ||| |||||  |||||||    
T  4750 gttgttgggttgtggattttgagttggagatgaagatgcaaataaggaggatgaattaattctgattttga 4680  T

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Target: scaffold0115; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 12490 - 12420
Alignment:
Q  224 gttgttggattatggattttgagttggagatgaagatgaaaataaagatgataaatcaattcctattttga 294  Q
    |||||||| || |||||||||||||||||||||||||| |||||| || ||| ||| |||||  |||||||    
T  12490 gttgttgggttgtggattttgagttggagatgaagatgcaaataaggaggatgaattaattctgattttga 12420  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 16728210 - 16728156
Alignment:
Q  240 ttttgagttggagatgaagatgaaaataaagatgataaatcaattcctattttga 294  Q
    ||||||||||||||||||||||||||||| || ||  |||||||| | |||||||    
T  16728210 ttttgagttggagatgaagatgaaaataaggaggaagaatcaatttcgattttga 16728156  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 11182714 - 11182661
Alignment:
Q  207 gttgatgatggcttggggttgttggattatggattttgagttggagatgaagat 260  Q
    ||||||||||| || |||||||| ||||||||||||| ||||  ||||||||||    
T  11182714 gttgatgatggttttgggttgttagattatggattttcagttctagatgaagat 11182661  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 17864408 - 17864456
Alignment:
Q  222 gggttgttggattatggattttgagttggagatgaagatgaaaataaag 270  Q
    |||||||||||||||||||||||| |||  |||||||| ||| ||||||    
T  17864408 gggttgttggattatggattttgaattgatgatgaagaagaagataaag 17864456  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 31409742 - 31409694
Alignment:
Q  222 gggttgttggattatggattttgagttggagatgaagatgaaaataaag 270  Q
    |||||||||||||||||||||||| |||  |||||||| ||| ||||||    
T  31409742 gggttgttggattatggattttgaattgatgatgaagaagaagataaag 31409694  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 52190062 - 52190110
Alignment:
Q  222 gggttgttggattatggattttgagttggagatgaagatgaaaataaag 270  Q
    |||||||||||||||||||||||| |||  |||||||| ||| ||||||    
T  52190062 gggttgttggattatggattttgaattgatgatgaagaagaagataaag 52190110  T

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