View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18362_low_8 (Length: 249)

Name: NF18362_low_8
Description: NF18362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18362_low_8
NF18362_low_8
[»] chr1 (12 HSPs)
chr1 (20-240)||(38226792-38227011)
chr1 (144-240)||(27782102-27782198)
chr1 (144-234)||(27777761-27777851)
chr1 (155-240)||(17700147-17700232)
chr1 (66-142)||(27781299-27781383)
chr1 (23-88)||(17663601-17663666)
chr1 (144-240)||(21898925-21899020)
chr1 (144-179)||(27781404-27781439)
chr1 (179-240)||(17663772-17663833)
chr1 (23-88)||(17700313-17700378)
chr1 (20-78)||(27777610-27777668)
chr1 (20-78)||(27782293-27782351)
[»] chr4 (4 HSPs)
chr4 (144-240)||(35249941-35250037)
chr4 (20-109)||(35250109-35250198)
chr4 (20-64)||(51220797-51220841)
chr4 (23-64)||(51220010-51220051)
[»] chr7 (2 HSPs)
chr7 (20-64)||(440904-440948)
chr7 (26-58)||(440807-440839)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 38227011 - 38226792
Alignment:
Q  20 aacgagcttccaagtgatgagtttgaagatgaaaccaactagtgtttcgtcttagtttatatcttttttgtgattttgaatgatattatgatgggatgga 119  Q
    |||||||||||||||||||||||||||||| ||||||| |||||| ||||| |||||||||| |||||||||||||| ||||||||||||||||||||||    
T  38227011 aacgagcttccaagtgatgagtttgaagataaaaccaattagtgtctcgtcatagtttatat-ttttttgtgatttttaatgatattatgatgggatgga 38226913  T
Q  120 cacccttgacgttgtcatgtaatgtatcatcatgaattattgagcaatttgcttacaagatatatataaagtttagtttatcaatttacaccttttacat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38226912 cacccttgacgttgtcatgtaatgtatcatcatgaattattgagcaatttgcttacaagatatatataaagtttagtttatcaatttacaccttttacat 38226813  T
Q  220 ttgtcttaatcttctaatttt 240  Q
    |||||||||||||||||||||    
T  38226812 ttgtcttaatcttctaatttt 38226792  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 27782198 - 27782102
Alignment:
Q  144 tatcatcatgaattattgagcaatttgcttacaagatatatataaagtttagtttatcaatttacaccttttacatttgtcttaatcttctaatttt 240  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  27782198 tatcatcatgaattattgagcaattcgcttacaagatatatataaagtttagtttatcaatttccaccttttacatttgtcttaatcttctagtttt 27782102  T

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Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 27777761 - 27777851
Alignment:
Q  144 tatcatcatgaattattgagcaatttgcttacaagatatatataaagtttagtttatcaatttacaccttttacatttgtcttaatcttct 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  27777761 tatcatcatgaattattgagcaatttgcttacaagatatatataaagtttagtttatcaatttccatcttttacatttgtcttaatcttct 27777851  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 17700232 - 17700147
Alignment:
Q  155 attattgagcaatttgcttacaagatatatataaagtttagtttatcaatttacaccttttacatttgtcttaatcttctaatttt 240  Q
    |||||||| || |||||| ||| |||||||||||| ||||| |||||||||| ||||||||    |||||||||||||||||||||    
T  17700232 attattgaacagtttgctgacacgatatatataaattttagattatcaatttccaccttttgtggttgtcttaatcttctaatttt 17700147  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 27781299 - 27781383
Alignment:
Q  66 tcgtcttagtttatatcttttttgtgattttgaatgatattatg--------atgggatggacacccttgacgttgtcatgtaat 142  Q
    ||||||||||||||||||||||  ||||||||||||||||||||        |||||||||| |||||||| |||||||||||||    
T  27781299 tcgtcttagtttatatctttttaatgattttgaatgatattatgaattttttatgggatggatacccttgatgttgtcatgtaat 27781383  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 17663601 - 17663666
Alignment:
Q  23 gagcttccaagtgatgagtttgaagatgaaaccaactagtgtttcgtcttagtttatatctttttt 88  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| | |  |||||||| ||||||    
T  17663601 gagcttccaagtgatgattttgaagatgaaaccaattagtgtttcttttatgtttatatttttttt 17663666  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 21899020 - 21898925
Alignment:
Q  144 tatcatcatgaattattgagcaatttgcttacaagatatatataaagtttagtttatcaatttacaccttttacatttgtcttaatcttctaatttt 240  Q
    |||||| ||| |||||||| || |||||| ||| ||| |||||||| ||| ||| |||||||| ||||||||   ||||||||||||||||||||||    
T  21899020 tatcattatggattattgaacagtttgctgacacgatttatataaattttggtt-atcaatttccaccttttgtgtttgtcttaatcttctaatttt 21898925  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 27781404 - 27781439
Alignment:
Q  144 tatcatcatgaattattgagcaatttgcttacaaga 179  Q
    ||||||||||||||||||||||||||||||||||||    
T  27781404 tatcatcatgaattattgagcaatttgcttacaaga 27781439  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 17663772 - 17663833
Alignment:
Q  179 atatatataaagtttagtttatcaatttacaccttttacatttgtcttaatcttctaatttt 240  Q
    ||||||||||| ||||| || ||||||| ||||||||   ||||||||||||||||||||||    
T  17663772 atatatataaattttagattttcaatttccaccttttgtgtttgtcttaatcttctaatttt 17663833  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 17700378 - 17700313
Alignment:
Q  23 gagcttccaagtgatgagtttgaagatgaaaccaactagtgtttcgtcttagtttatatctttttt 88  Q
    ||||||||||||||||| ||||||||||||| ||| ||||||||| | |  |||||||| ||||||    
T  17700378 gagcttccaagtgatgattttgaagatgaaaacaattagtgtttcttttctgtttatatttttttt 17700313  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 27777610 - 27777668
Alignment:
Q  20 aacgagcttccaagtgatgagtttgaagatgaaaccaactagtgtttcgtcttagttta 78  Q
    |||||| || |||||||||| | ||||||||||||||| |||||| ||||||| |||||    
T  27777610 aacgagtttacaagtgatgattgtgaagatgaaaccaattagtgtctcgtcttggttta 27777668  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 27782351 - 27782293
Alignment:
Q  20 aacgagcttccaagtgatgagtttgaagatgaaaccaactagtgtttcgtcttagttta 78  Q
    |||||| || |||||||||| | ||||||||||||||| |||||| ||||||| |||||    
T  27782351 aacgagttttcaagtgatgattgtgaagatgaaaccaattagtgtctcgtcttggttta 27782293  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 35250037 - 35249941
Alignment:
Q  144 tatcatcatgaattattgagcaatttgcttacaagatatatataaagtttagtttatcaatttacaccttttacatttgtcttaatcttctaatttt 240  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||   ||||||||||||||||||| ||||||||||||    
T  35250037 tatcatcatgaattattgagcaatttgcttacaacatatatatagagtttagattatcaattattaccttttacatttgtcttagtcttctaatttt 35249941  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 35250198 - 35250109
Alignment:
Q  20 aacgagcttccaagtgatgagtttgaagatgaaaccaactagtgtttcgtcttagtttatatcttttttgtgattttgaatgatattatg 109  Q
    ||||||||| |||||||||| |||||||||||| |||| |||||| ||||||| ||||||||||||||  ||||||||||||||||||||    
T  35250198 aacgagcttgcaagtgatgattttgaagatgaatccaattagtgtctcgtcttggtttatatctttttaatgattttgaatgatattatg 35250109  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 51220841 - 51220797
Alignment:
Q  20 aacgagcttccaagtgatgagtttgaagatgaaaccaactagtgt 64  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  51220841 aacgagcttccaagtgatggttttgaagatgaaaccaactagtgt 51220797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 51220051 - 51220010
Alignment:
Q  23 gagcttccaagtgatgagtttgaagatgaaaccaactagtgt 64  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
T  51220051 gagcttccaagtgatgattttgaagatgaaaccaattagtgt 51220010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 440948 - 440904
Alignment:
Q  20 aacgagcttccaagtgatgagtttgaagatgaaaccaactagtgt 64  Q
    |||||||||||||||||||| |||||||||||||| || ||||||    
T  440948 aacgagcttccaagtgatgactttgaagatgaaactaattagtgt 440904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 440839 - 440807
Alignment:
Q  26 cttccaagtgatgagtttgaagatgaaaccaac 58  Q
    |||||||||||||| ||||||||||||||||||    
T  440839 cttccaagtgatgattttgaagatgaaaccaac 440807  T

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