View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18362_low_9 (Length: 215)
Name: NF18362_low_9
Description: NF18362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18362_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 8540214 - 8540042
Alignment:
| Q |
22 |
agcctaaatgttttctatggtggtcgacttcgccactttcttctgtttgcggtgtgcattataattcattacttttctcttttctcgttgctcagtgctt |
121 |
Q |
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| T |
8540214 |
agcctaaatgttttctatggtggtcgacttcgccactttcttctgtttggagtgtgcgttataattcattacttttctcttttgtctttgctcagtgctt |
8540115 |
T |
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| Q |
122 |
agttaccaacttaattgttctaataaattcctaatttgtgttctcatttgtagattggaaattgttgcaactc |
194 |
Q |
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| T |
8540114 |
agttaccaactcaattgttctaataaattcctaatttgtgttctcatttgtagattggaaattgttgcaactc |
8540042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 8588466 - 8588375
Alignment:
| Q |
22 |
agcctaaatgttttctatggtggtcgacttcgccactttcttctgtttgcggtgtgcattataattcattacttttctcttttctcgttgct |
113 |
Q |
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| T |
8588466 |
agcctaaatgttttctacggtggtcgtcttcgccactttcttcggtttgtggtgtgcattatacttcatcacttctctctttgctcattgct |
8588375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 8568997 - 8568921
Alignment:
| Q |
117 |
tgcttagttaccaacttaattgttctaataaattcctaatttgtgttctcatttgtagattggaaattgttgcaact |
193 |
Q |
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| T |
8568997 |
tgcttagttaccaactcaattgttctaataaaatcgtaatttgtattcccatttttagatcggaaaatgttgcaact |
8568921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 8569038 - 8568997
Alignment:
| Q |
62 |
ttctgtttgcggtgtgcattataattcattacttttctcttt |
103 |
Q |
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| T |
8569038 |
ttctgtttgcggagtgcatcatacttcattacttttctcttt |
8568997 |
T |
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