View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18363_high_1 (Length: 571)
Name: NF18363_high_1
Description: NF18363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18363_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 289 - 556
Target Start/End: Complemental strand, 41705399 - 41705132
Alignment:
| Q |
289 |
tttatggcggtggaagcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctattatggagagtgagtgtgttagaggt |
388 |
Q |
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| T |
41705399 |
tttatggcggtggaagcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctatcatggagagtgagtgtgttagaggt |
41705300 |
T |
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| Q |
389 |
aatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgatgaggagaaataacaggggagaagccatttggttaaaca--gtatttgnnnnnn |
486 |
Q |
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| T |
41705299 |
aatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgaggaggagaaataacaggggagaagccatttggttaaacagggtatttgtttttt |
41705200 |
T |
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| Q |
487 |
ngtgttggaacttgaatacagagagaggagaagagtttttgaatttgtagatggagtggtgtgtgatgat |
556 |
Q |
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| T |
41705199 |
tgtgttggaacttgaatac--agagaggagaagagtttttgaatttgtagatggagtggtgtgtgatgat |
41705132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 229
Target Start/End: Complemental strand, 41705665 - 41705459
Alignment:
| Q |
23 |
gtggaactgtgtgctacagagcatgcatgggagttgcatgaaatgggggtgctgtgggagatgttggtagggggagagggatccgaggtaagcttgggtt |
122 |
Q |
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| T |
41705665 |
gtggaactgtgtgctacagagcatgcatgggagttgcatgaaatgggggtgctgtgggagatgttggtagggggagagggatccgaggtaagcttgggtt |
41705566 |
T |
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| Q |
123 |
ttaattcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttgggagtggggtccgag |
222 |
Q |
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| T |
41705565 |
ttaattcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttgggagtggggtccgag |
41705466 |
T |
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| Q |
223 |
gttgaag |
229 |
Q |
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| T |
41705465 |
gttgaag |
41705459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 3744338 - 3744418
Alignment:
| Q |
127 |
ttcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttg |
207 |
Q |
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| T |
3744338 |
ttcacagagaatgcattcgaaaggtgaacaagggaaccaaacaaggtcgctacctgtgtccatgtagagtgttatgagttg |
3744418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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