View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18363_high_12 (Length: 271)
Name: NF18363_high_12
Description: NF18363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18363_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 47880471 - 47880722
Alignment:
| Q |
1 |
tctcttgtggtcattgtgatgagaattaatcataaaattacaaaaatcttataaaaattgtttatactatcatataccgtataataccacaatttgtcaa |
100 |
Q |
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| T |
47880471 |
tctcttgtggtcattgtgatgagaattaatcacaa--ttacaaaaatcttataaaaattatttatactatcatataccgtataataccacaatttgtcaa |
47880568 |
T |
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| Q |
101 |
tttctcatggtttcctcgtaatttcataactgaaattattttcatgattttgtttttactaaaaaccaaattaaacactaataaatctaatgggacaaaa |
200 |
Q |
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| T |
47880569 |
tttctcatggtttcctcgtaatttcataactgaaattcttttcatgattttgtttttactaaaaacaaaattaaacactaataaatctaatgggacaaaa |
47880668 |
T |
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| Q |
201 |
aatttgttctctactgtttgttttggctgtaacgacattttgttgtgacataac |
254 |
Q |
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| T |
47880669 |
aatttgttctctactgtttgttttggctgtaacgacactttgttgtgacataac |
47880722 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 6196538 - 6196583
Alignment:
| Q |
144 |
atgattttgtttttactaaaaaccaaattaaacactaataaatcta |
189 |
Q |
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|||| ||||||| | |||||||||||||||| |||||||||||||| |
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| T |
6196538 |
atgaatttgtttcttctaaaaaccaaattaaccactaataaatcta |
6196583 |
T |
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