View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18363_high_15 (Length: 241)
Name: NF18363_high_15
Description: NF18363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18363_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40768545 - 40768325
Alignment:
| Q |
1 |
cgctctcgtcaggcatgtgatgaagctggaatgcaaagttcaccacaagagcttctccacgacgacaattaagcattgatgaggtgacaatcgaagtcct |
100 |
Q |
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| T |
40768545 |
cgctctcgtcaggcatgtgatgaagctggaatgcaaagttcaccacaagagcttctccacgacgacaattaagcattgatgaggtgacaatcgaagtcct |
40768446 |
T |
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| Q |
101 |
cgatgagaccgctcgaaattcaaatgacaaaccaagtgtttctgctagttgttcaagtctttgtcctatgatctttagtcctccaatggatcgctgcacg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40768445 |
cgatgagaccgctcgaaattcaaatgacaaaccaagtgtttctgctagttgttcaagtcgttgtcctatgatctttagtcctccaatggatcgctgcacg |
40768346 |
T |
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| Q |
201 |
gactcaggatcatcaatcccg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
40768345 |
gactcaggatcatcaatcccg |
40768325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 6 - 216
Target Start/End: Original strand, 10093238 - 10093448
Alignment:
| Q |
6 |
tcgtcaggcatgtgatgaagctggaatgcaaagttcaccacaagagcttctccacgacgacaattaagcattgatgaggtgacaatcgaagtcctcgatg |
105 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||| || |||||||||| || ||||| |||| ||| |||| |
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| T |
10093238 |
tcgtcgggcatgtgatgaagctggaatgcaaagttcaccacaagggcttccccgggacgacagttgagcattgatggagtaacaattgaagaccttgatg |
10093337 |
T |
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| Q |
106 |
agaccgctcgaaattcaaatgacaaaccaagtgtttctgctagttgttcaagtctttgtcctatgatctttagtcctccaatggatcgctgcacggactc |
205 |
Q |
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|| |||||||||||||||| ||| || ||| ||||||||| | ||||||||||||||||||||| |||| ||||||| ||||| |||||||| || |
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| T |
10093338 |
ctacggctcgaaattcaaatggcaatccgagtacttctgctagcttttcaagtctttgtcctatgatacttaggcctccaacagatcgttgcacggattc |
10093437 |
T |
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| Q |
206 |
aggatcatcaa |
216 |
Q |
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||||||||||| |
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| T |
10093438 |
aggatcatcaa |
10093448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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