View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18363_high_19 (Length: 213)
Name: NF18363_high_19
Description: NF18363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18363_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 49218474 - 49218286
Alignment:
| Q |
8 |
gagagagatgaatggagtaagggccatctgttagtgacaagagagtgccaaatggaatctgagaagcatagttgtctccagaattttgaacagcaaccca |
107 |
Q |
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| T |
49218474 |
gagagagaggaatggagtaagggccatctgttagtgacaagagagtgccaaatggaatctgagaagcatagttttctccagaattttgaacagcaaccca |
49218375 |
T |
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| Q |
108 |
aagcacacaaatcacgcacctggaaaacgtgaaagaagtaaaaggatgaatgaaaatggaaatggaaggtgtagcatgcatgatatgat |
196 |
Q |
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| T |
49218374 |
aagcacacaaatcacgcacctggaaaacgtgaaagaagtaaaagggtgaatgaaaatggaaatggaaggtgtagcatgcatgatatgat |
49218286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 33358792 - 33358723
Alignment:
| Q |
70 |
gaagcatagttgtct-ccagaattttgaacagcaacccaaagcacacaaatcacgcacctggaaaacgtg |
138 |
Q |
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||||||||||||| | ||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
33358792 |
gaagcatagttgtgttccagaatttggaacaacaacccaaagcacacaaatcacgcaccttgaaaacgtg |
33358723 |
T |
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