View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18363_high_4 (Length: 394)
Name: NF18363_high_4
Description: NF18363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18363_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 32506870 - 32506656
Alignment:
| Q |
1 |
tagaatatgaaggtggaggtgtgagaggaggcagagaagtttctgacaaaggatgtttaggtgttcctggttgtgcttcccacatgaaaggaacagcaac |
100 |
Q |
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| T |
32506870 |
tagaatatgaaggtggaggtgtgagaggaggcagagaagtttctgacaaaggatgtttaggtgttcctggttgtgcctcccacatgaaaggaacagcaac |
32506771 |
T |
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| Q |
101 |
agatgtttcaccataatagaacactctccttgaagatgagttggcatttgaggtttcctttgacattagcctagnnnnnnncctaccatcatgtgttatt |
200 |
Q |
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| T |
32506770 |
agatgtttcaccataatagaaaactctccttgaagatgagttggcatttgaggtttccttggacattagcctagaaaaaaacctaccatcttgtgttatt |
32506671 |
T |
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| Q |
201 |
ctgaaggacatttca |
215 |
Q |
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| T |
32506670 |
ctgaaggacatttca |
32506656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 242 - 393
Target Start/End: Complemental strand, 32506629 - 32506478
Alignment:
| Q |
242 |
accatcattcaaaaccattttagatattggaaactatttttgagtactctctagatatcgtaaaaacttagatctnnnnnnntgcctctagattagagtc |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
32506629 |
accatcattcaaaaccattttagatattggaaactatttttgagtactctctagatatcttaaaaacttagatctaaaaaaatgcctctagattagagtc |
32506530 |
T |
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| Q |
342 |
aaaaaacatctacatgtgtagactctagggacattattatcctatggttctg |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32506529 |
aaaaaacatctacatgtgtagactctagggacattattatcttatggttctg |
32506478 |
T |
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