View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18363_low_1 (Length: 779)

Name: NF18363_low_1
Description: NF18363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18363_low_1
NF18363_low_1
[»] chr4 (17 HSPs)
chr4 (10-779)||(2813760-2814543)
chr4 (473-632)||(4377154-4377313)
chr4 (378-624)||(2158552-2158801)
chr4 (473-629)||(36247748-36247905)
chr4 (473-634)||(33517945-33518107)
chr4 (431-609)||(1111940-1112118)
chr4 (378-508)||(36247913-36248043)
chr4 (556-632)||(51070314-51070390)
chr4 (518-575)||(50723220-50723277)
chr4 (564-628)||(1758191-1758255)
chr4 (408-508)||(25023196-25023295)
chr4 (439-508)||(33518115-33518184)
chr4 (378-497)||(4377331-4377452)
chr4 (577-632)||(2185129-2185184)
chr4 (460-600)||(52849750-52849884)
chr4 (592-629)||(13834129-13834166)
chr4 (280-353)||(47517880-47517953)
[»] chr3 (22 HSPs)
chr3 (378-632)||(26285756-26286012)
chr3 (378-633)||(7856413-7856670)
chr3 (378-625)||(24309801-24310047)
chr3 (381-632)||(36475385-36475635)
chr3 (400-632)||(23778173-23778410)
chr3 (518-629)||(25032175-25032286)
chr3 (474-580)||(36478213-36478319)
chr3 (460-546)||(52308867-52308953)
chr3 (490-626)||(30136508-30136644)
chr3 (490-626)||(30142637-30142773)
chr3 (490-626)||(30146059-30146195)
chr3 (418-539)||(38572987-38573108)
chr3 (472-568)||(395922-396019)
chr3 (378-506)||(36477977-36478106)
chr3 (479-598)||(6714403-6714522)
chr3 (547-614)||(35504208-35504275)
chr3 (556-630)||(19832038-19832112)
chr3 (400-526)||(25070674-25070800)
chr3 (400-526)||(26903174-26903300)
chr3 (400-526)||(36617740-36617866)
chr3 (567-623)||(8034690-8034746)
chr3 (482-523)||(23794964-23795005)
[»] chr8 (20 HSPs)
chr8 (378-632)||(44873203-44873456)
chr8 (378-628)||(29866084-29866336)
chr8 (378-628)||(10381343-10381592)
chr8 (434-632)||(7681353-7681551)
chr8 (400-626)||(32161349-32161573)
chr8 (418-614)||(24556878-24557074)
chr8 (523-624)||(6978410-6978511)
chr8 (460-546)||(11993687-11993773)
chr8 (431-580)||(29841154-29841304)
chr8 (476-546)||(34696984-34697054)
chr8 (418-598)||(7388102-7388283)
chr8 (458-596)||(2148338-2148477)
chr8 (400-514)||(6802716-6802830)
chr8 (472-575)||(43421486-43421590)
chr8 (400-526)||(45486158-45486284)
chr8 (497-546)||(35990865-35990914)
chr8 (559-614)||(6802833-6802888)
chr8 (556-634)||(7392126-7392203)
chr8 (577-631)||(34697094-34697148)
chr8 (410-507)||(33235596-33235693)
[»] chr1 (17 HSPs)
chr1 (378-575)||(9539548-9539744)
chr1 (400-632)||(27464214-27464446)
chr1 (378-624)||(8064906-8065151)
chr1 (473-575)||(10781246-10781348)
chr1 (379-509)||(10781104-10781235)
chr1 (530-611)||(23347795-23347876)
chr1 (563-632)||(9539762-9539831)
chr1 (556-633)||(43909377-43909454)
chr1 (556-634)||(9516767-9516845)
chr1 (539-609)||(34912296-34912366)
chr1 (556-633)||(35438901-35438978)
chr1 (556-628)||(281148-281219)
chr1 (435-510)||(23353428-23353503)
chr1 (563-634)||(39299269-39299340)
chr1 (586-632)||(44352815-44352861)
chr1 (378-443)||(25031052-25031116)
chr1 (269-370)||(40848867-40848968)
[»] chr5 (16 HSPs)
chr5 (378-631)||(36744855-36745110)
chr5 (381-623)||(43144488-43144731)
chr5 (378-606)||(34751012-34751239)
chr5 (401-628)||(25818997-25819228)
chr5 (481-632)||(26459610-26459761)
chr5 (400-630)||(5069761-5069995)
chr5 (458-607)||(5568955-5569105)
chr5 (471-600)||(33824760-33824890)
chr5 (431-546)||(7607248-7607363)
chr5 (518-632)||(36633908-36634024)
chr5 (431-597)||(980137-980302)
chr5 (542-632)||(22536876-22536966)
chr5 (537-600)||(35676348-35676410)
chr5 (566-632)||(7607392-7607458)
chr5 (434-504)||(29670020-29670090)
chr5 (489-580)||(39509128-39509220)
[»] chr2 (13 HSPs)
chr2 (378-631)||(32032893-32033145)
chr2 (431-631)||(7700258-7700457)
chr2 (419-625)||(34878614-34878821)
chr2 (419-619)||(18703633-18703822)
chr2 (431-546)||(34190030-34190145)
chr2 (518-631)||(11562084-11562194)
chr2 (477-619)||(27447736-27447879)
chr2 (469-611)||(38417728-38417871)
chr2 (418-516)||(3357064-3357161)
chr2 (540-619)||(16639293-16639372)
chr2 (567-632)||(18458698-18458763)
chr2 (569-632)||(6141381-6141444)
chr2 (458-511)||(16639187-16639240)
[»] chr7 (26 HSPs)
chr7 (378-630)||(33941572-33941814)
chr7 (378-600)||(30074563-30074786)
chr7 (489-597)||(34346852-34346960)
chr7 (472-632)||(26824465-26824628)
chr7 (378-566)||(2945330-2945519)
chr7 (458-629)||(46090209-46090380)
chr7 (381-542)||(24658431-24658590)
chr7 (471-632)||(32221862-32222026)
chr7 (400-546)||(38300330-38300480)
chr7 (418-580)||(25232916-25233079)
chr7 (431-629)||(27080339-27080534)
chr7 (431-629)||(27197767-27197962)
chr7 (458-563)||(39785484-39785590)
chr7 (556-632)||(7899402-7899478)
chr7 (556-629)||(26050085-26050158)
chr7 (556-625)||(26059448-26059517)
chr7 (378-526)||(1691671-1691818)
chr7 (477-538)||(40716946-40717008)
chr7 (567-632)||(10702659-10702724)
chr7 (558-632)||(2945846-2945917)
chr7 (539-599)||(49143956-49144016)
chr7 (400-507)||(43265897-43266004)
chr7 (567-629)||(10703218-10703280)
chr7 (410-507)||(10512018-10512115)
chr7 (567-626)||(1691539-1691598)
chr7 (431-526)||(39780992-39781087)
[»] chr6 (13 HSPs)
chr6 (459-619)||(16461644-16461804)
chr6 (378-630)||(14607698-14607926)
chr6 (439-598)||(6689160-6689316)
chr6 (518-623)||(2919959-2920062)
chr6 (458-626)||(1975266-1975435)
chr6 (400-595)||(30705248-30705438)
chr6 (408-546)||(21883261-21883399)
chr6 (478-600)||(30702648-30702768)
chr6 (460-546)||(33704118-33704205)
chr6 (400-526)||(18816936-18817062)
chr6 (566-631)||(33704022-33704087)
chr6 (497-541)||(35188058-35188102)
chr6 (400-507)||(24901724-24901831)
[»] scaffold0002 (1 HSPs)
scaffold0002 (419-627)||(461302-461511)
[»] scaffold0311 (1 HSPs)
scaffold0311 (418-632)||(817-1027)
[»] scaffold0535 (1 HSPs)
scaffold0535 (421-597)||(9625-9800)


Alignment Details
Target: chr4 (Bit Score: 598; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 10 - 779
Target Start/End: Complemental strand, 2814543 - 2813760
Alignment:
Q  10 gtgagatgaaaccaacaaaaattaaagaagatgaaagaaaatagacataaacaaatctagattttcttagatctagcatatcacgaaaatgattttctta 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2814543 gtgagaagaaaccaacaaaaattaaagaagatgaaagaaaatagacataaacaaatctagattttcttagatctagcatatcacggaaatgattttctta 2814444  T
Q  110 gattaaacgaattccatcaatctaattttgccctt---------------gtgttctgtgtttttagcactgctgagtgctcaaccacgtgacactgaca 194  Q
    |||||||||| ||||||||||||||||||||||||               ||||||||||||||||||| || |||||||||||||||||||||||||||    
T  2814443 gattaaacgacttccatcaatctaattttgcccttttgtgttctgtgtttgtgttctgtgtttttagcagtgttgagtgctcaaccacgtgacactgaca 2814344  T
Q  195 gatacttattacagctgtgtgctctatatgtatatgtatagttcggtcggtgcagcataccgttgggtttggattttcacttgtgccgattgacccgcgt 294  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  2814343 gatacttattacagctgtgtgctccatatgtatatgtatagttcggtcggtgcagcataccgttgggtctggattttcacttgtgccgattgacccgcat 2814244  T
Q  295 caactgttcgacctgacccgacacccttcggtccgtacggtttggccggtttgggccggatattttatttttgtccagtcctagtgaagagtaacctata 394  Q
    |||| |||||||| ||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2814243 caaccgttcgacccgacccaacacccttcggtccatacagtttggccggtttgggccggatattttatttttgtccagtcctagtgaagagtaacctatg 2814144  T
Q  395 taataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattt 494  Q
    |||||||  ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  2814143 taataaac-tggatgatcagtaactaaatgaccgtattgtaacttgtatagaaatatatgatgttttaacaataagcaatgatgttattttagctcattt 2814045  T
Q  495 tcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaatt 594  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2814044 tcaacaaatggatatgagacgactttcattgtaatgtattgtatcaaacaattttatttcatatttttaatatagtttgcattattgtttctttgaaatt 2813945  T
Q  595 ttagccccacatataccaaaagtctggatccgcccctgatttttagattatataatttgaaatattataatgcatgcgagaaactttgagggtgaaataa 694  Q
    ||||| ||| |||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  2813944 ttagctccatatataccaaaagtctgaatccgcccatgatttttagattatataatttgaagtattataatgcatgcgagaaactttgagggtgaaaaaa 2813845  T
Q  695 gaaacactctttaaactaataannnnnnngggctgagcggcaaactggcaatggtcaattagtccaagaaaatattacaccgttt 779  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2813844 gaaacactctttaaactaataatttttttgggctgagcggcaaactggcaatggtcaattagtccaagaaaatattacaccgttt 2813760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 473 - 632
Target Start/End: Complemental strand, 4377313 - 4377154
Alignment:
Q  473 atgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagttt 572  Q
    ||||||| |||||| |||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||    
T  4377313 atgatgtcattttaactcattttcaacaaatggatataagacgattttcattgtaatgtattgtatcaaacaatattatttcttatttttaatatagttt 4377214  T
Q  573 gcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 632  Q
    ||| |||||||||||||||||| |||| |||||| |||| |||||||||||| |||||||    
T  4377213 gcattattgtttctttgaaattatagctccacatgtacctaaagtctggatctgcccctg 4377154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 378 - 624
Target Start/End: Complemental strand, 2158801 - 2158552
Alignment:
Q  378 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 477  Q
    |||||||||||||||| ||| |||| ||||||||   |  |||||||||||| ||||||| |||||||||| | ||  | |||||||||| | |||||||    
T  2158801 gtgaagagtaacctatgtaacaaaa-tgggtgattgatggctaaatgaccgtcttgtaacctatatagaaagagatcttcttttaacaattagcaatgat 2158703  T
Q  478 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 577  Q
     |||||||| ||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| |    
T  2158702 attattttagctcattttcaacaaatggataggagacgattttcattgtaatgtattgtatcaaacaatgttatttcttatttttaatatagtttgcatt 2158603  T
Q  578 at----tgtttctttgaaattttagccccacatataccaaaagtctggatc 624  Q
    ||    | ||  |||||||||||||||  ||||||||||||||||| ||||    
T  2158602 attttattttattttgaaattttagccatacatataccaaaagtctagatc 2158552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 473 - 629
Target Start/End: Complemental strand, 36247905 - 36247748
Alignment:
Q  473 atgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcata-tttttaatatagtt 571  Q
    ||||||| |||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| | | ||| || ||||||||||||||    
T  36247905 atgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatcaaacaatatgaattcttattttttaatatagtt 36247806  T
Q  572 tgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgccc 629  Q
    |||| |||||||||||| |||||||||| |||||| |||| |||||||||||||||||    
T  36247805 tgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgccc 36247748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 473 - 634
Target Start/End: Complemental strand, 33518107 - 33517945
Alignment:
Q  473 atgatgttattttacctcatttt-caacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtt 571  Q
    ||||||| |||||| |||||||| | |||||||||||| |||||| ||||||||| ||||||||||||||||||| ||||||| ||||||||||||| ||    
T  33518107 atgatgtcattttagctcatttttcgacaaatggatataagacgattttcattgtaatgtattgtatcaaacaatattatttcttatttttaatataatt 33518008  T
Q  572 tgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctgat 634  Q
    || | |||||||||||| |||||||| | || |||||||| || |||| ||||||||||||||    
T  33518007 tgtattattgtttctttaaaattttaactccgcatatacctaatgtctagatccgcccctgat 33517945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 431 - 609
Target Start/End: Complemental strand, 1112118 - 1111940
Alignment:
Q  431 ttgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtga-t 529  Q
    |||||||||||||||||||| ||| | |||||||||| ||||| || |||||||||  |||||||||||||||||||| ||||| | ||| ||||| | |    
T  1112118 ttgtaacttatatagaaatacatgttcttttaacaattaacaacgaggttattttagatcattttcaacaaatggataagagacaattttgattgtaatt 1112019  T
Q  530 gtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatata 609  Q
    |||| | |||||||||| ||||||| |||| |||||| |||||||| |||| |||| |||||||||||||| || |||||    
T  1112018 gtatcgcatcaaacaatgttatttcttattattaata-agtttgcattattatttcattgaaattttagccacatatata 1111940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 378 - 508
Target Start/End: Complemental strand, 36248043 - 36247913
Alignment:
Q  378 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaactta--tatagaaatatatgatgttttaacaataaacaatg 475  Q
    |||||||||||||||| ||| |||| ||| ||||||||  |||||||||||| ||||||||||  |||||||| ||||| | |||||||||| |||||||    
T  36248043 gtgaagagtaacctatttaacaaaa-tggatgatcagtggctaaatgaccgttttgtaacttacatatagaaagatatgttcttttaacaattaacaatg 36247945  T
Q  476 atgttattttacctcattttcaacaaatggata 508  Q
    |||| |||||| |||| ||||||||||||||||    
T  36247944 atgtcattttagctca-tttcaacaaatggata 36247913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 556 - 632
Target Start/End: Complemental strand, 51070390 - 51070314
Alignment:
Q  556 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 632  Q
    ||||||||||||||||||||||||||||| ||  |||||||| |||||||||||| ||| || ||||||||||||||    
T  51070390 tatttttaatatagtttgcaatattgttttttcaaaattttaaccccacatatactaaatgtttggatccgcccctg 51070314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 518 - 575
Target Start/End: Original strand, 50723220 - 50723277
Alignment:
Q  518 tttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgca 575  Q
    ||||||||| ||||||| ||||||||||| ||||||| ||||||||||||||||||||    
T  50723220 tttcattgtaatgtattatatcaaacaatgttatttcttatttttaatatagtttgca 50723277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 564 - 628
Target Start/End: Complemental strand, 1758255 - 1758191
Alignment:
Q  564 atatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcc 628  Q
    ||||||||| || |||||||||||||||||||||||||||||| |||||||  ||| ||||||||    
T  1758255 atatagtttacattattgtttctttgaaattttagccccacatgtaccaaatatctagatccgcc 1758191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 408 - 508
Target Start/End: Original strand, 25023196 - 25023295
Alignment:
Q  408 tgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggat 507  Q
    ||||||||  |||||| ||||| |||||||||||||||||||| ||| | |||||||||| | ||||||| |||||||| | |||||| ||||||| |||    
T  25023196 tgatcagtggctaaataaccgtcttgtaacttatatagaaatagatgttcttttaacaattagcaatgat-ttattttagcgcattttaaacaaatagat 25023294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 439 - 508
Target Start/End: Complemental strand, 33518184 - 33518115
Alignment:
Q  439 tatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggata 508  Q
    |||||||||||| ||| | |||||||||| | ||||||||| |||||| ||||||||||||| |||||||    
T  33518184 tatatagaaatagatgttcttttaacaattagcaatgatgtcattttagctcattttcaacagatggata 33518115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 378 - 497
Target Start/End: Complemental strand, 4377452 - 4377331
Alignment:
Q  378 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatata---gaaatatatgatgttttaacaataaacaat 474  Q
    |||||||||||||||| ||| |||| ||||||||||||  |||||||| ||| ||||||||||||||    ||| | ||| | ||| |||||| | ||||    
T  4377452 gtgaagagtaacctatgtaacaaaa-tgggtgatcagtggctaaatgatcgtcttgtaacttatatatagaaaaaagatgttctttaaacaattagcaat 4377354  T
Q  475 gatgttattttacctcattttca 497  Q
    ||||| |||||| ||||||||||    
T  4377353 gatgtcattttagctcattttca 4377331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 577 - 632
Target Start/End: Complemental strand, 2185184 - 2185129
Alignment:
Q  577 tattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 632  Q
    |||| ||| |||||||||||||| ||||||||||| ||||| ||||||||||||||    
T  2185184 tattatttatttgaaattttagctccacatatacctaaagtttggatccgcccctg 2185129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 460 - 600
Target Start/End: Original strand, 52849750 - 52849884
Alignment:
Q  460 ttaacaataaacaatgatgttatttta--cctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcata 557  Q
    |||||||| | ||||||| ||||||||  ||  ||| ||||||||| |||| || || | ||||||||| || |||||||| |||||||||        |    
T  52849750 ttaacaattatcaatgatattattttagtccatattatcaacaaattgataggaaaccattttcattgtaatatattgtattaaacaattt--------a 52849841  T
Q  558 tttttaatatagtttgcaatattgtttctttgaaattttagcc 600  Q
    |||||||||||||||| | |||||||||||| |||||||||||    
T  52849842 tttttaatatagtttgtattattgtttctttaaaattttagcc 52849884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 629
Target Start/End: Complemental strand, 13834166 - 13834129
Alignment:
Q  592 attttagccccacatataccaaaagtctggatccgccc 629  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  13834166 attttagccccacatgtaccaaatgtctggatccgccc 13834129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 280 - 353
Target Start/End: Original strand, 47517880 - 47517953
Alignment:
Q  280 ccgattgacccgcgtcaactgttcgacctgacccgacacccttcggtccgtacggtttggccggtttgggccgg 353  Q
    ||||||||||||| | ||||||| |||| |||||||||| |||| |  | | ||||| ||||||||||||||||    
T  47517880 ccgattgacccgcttaaactgttggacccgacccgacacgcttcaggtcatccggttcggccggtttgggccgg 47517953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 5e-61; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 378 - 632
Target Start/End: Original strand, 26285756 - 26286012
Alignment:
Q  378 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 477  Q
    ||||||||||||| || ||| |||| |||||||| |||  ||||||||| || ||||||| ||| |||||| ||||| | |||||||||| | |||||||    
T  26285756 gtgaagagtaaccaatgtaacaaaa-tgggtgattagtggctaaatgactgtcttgtaacatatgtagaaagatatgttcttttaacaattagcaatgat 26285854  T
Q  478 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 577  Q
    ||  ||||| ||||||||||||||||||||| || |||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| |    
T  26285855 gtccttttaactcattttcaacaaatggataggaaacgattttcattgtaatgtattgtatcaaacaatgttatttcttatttttaatatagtttgcatt 26285954  T
Q  578 attg---tttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 632  Q
    ||||   ||| |||||||||| ||||||||||||| | ||||||||||||||||||||    
T  26285955 attgctatttttttgaaatttaagccccacatatatctaaagtctggatccgcccctg 26286012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 378 - 633
Target Start/End: Complemental strand, 7856670 - 7856413
Alignment:
Q  378 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 477  Q
    |||||||||||||||||||| |||| ||||||||||||  ||||||||| || |||||||||||||||||| | ||| | |||||||||| ||||||||     
T  7856670 gtgaagagtaacctatataacaaaa-tgggtgatcagtggctaaatgactgtcttgtaacttatatagaaagagatgttcttttaacaattaacaatgac 7856572  T
Q  478 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaa---ttttatttcatatttttaatatagtttgc 574  Q
    || |||||| |||||||| |||||||||||| ||||||| ||| ||| | ||||||||||||||||||   ||||||||  ||||||||||||| |||||    
T  7856571 gtcattttagctcatttttaacaaatggataggagacgatttttattataatgtattgtatcaaacaatatttttattt-ttatttttaatataatttgc 7856473  T
Q  575 aatattgtttctttgaaattttagccccaca-tataccaaaagtctggatccgcccctga 633  Q
    | ||||||||||||||||||||||| ||| | |||||| |||||| ||||||||||||||    
T  7856472 attattgtttctttgaaattttagctccaaattatacctaaagtccggatccgcccctga 7856413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 378 - 625
Target Start/End: Complemental strand, 24310047 - 24309801
Alignment:
Q  378 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 477  Q
    |||||||||||| ||| |||||||| ||| ||||| ||   |||||||  || |||||||||| ||||||| | ||| | |||||||||| |||||||||    
T  24310047 gtgaagagtaacatatgtaataaaa-tggatgatcggtggttaaatgaatgtcttgtaacttacatagaaagagatgttcttttaacaattaacaatgat 24309949  T
Q  478 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 577  Q
    || |||||  || |||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| |    
T  24309948 gtgattttgacttattttcaacaaatggataggagacgattttcattgtaatgtattgtatcaaacaatattatttcttatttttaatatagtttgcatt 24309849  T
Q  578 attgtttctttgaaattttagccccacatataccaaaagtctggatcc 625  Q
    ||||||||||||||||||||||  | ||| |||| |||||||||||||    
T  24309848 attgtttctttgaaattttagcttcgcatgtacctaaagtctggatcc 24309801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 381 - 632
Target Start/End: Complemental strand, 36475635 - 36475385
Alignment:
Q  381 aagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgtt 480  Q
    ||||||||||||| ||| |||| || |||||||||   ||||  ||||| |||||||||||||| ||| | ||| | |||||||||| | |||||||||     
T  36475635 aagagtaacctatgtaacaaaa-tgagtgatcagttgataaacaaccgtcttgtaacttatataaaaagagatgttcttttaacaattagcaatgatgtc 36475537  T
Q  481 attttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatatt 580  Q
    |||||  |||||||| |||||||| ||  ||||||| |||||||||  |||||||||||||||||| ||||||| |||||||||||||||||||  ||||    
T  36475536 attttcgctcatttttaacaaatgaatgggagacgattttcattgtagtgtattgtatcaaacaatgttatttcttatttttaatatagtttgcgttatt 36475437  T
Q  581 gtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 632  Q
    ||||||||||||||||| ||||||||||||||||| ||| |||||| |||||    
T  36475436 gtttctttgaaattttaaccccacatataccaaaaatctagatccgtccctg 36475385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 400 - 632
Target Start/End: Complemental strand, 23778410 - 23778173
Alignment:
Q  400 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 499  Q
    |||||||||||||||| ||||||| ||||| |||| ||||||||||||| | ||| | |||||||||| | ||||||||| |||||| ||||||||||||    
T  23778410 aaaatgggtgatcagtgactaaataaccgttttgttacttatatagaaagagatgttcttttaacaattagcaatgatgtcattttagctcattttcaac 23778311  T
Q  500 aaatggatatgagacgactttcat-----tgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaatt 594  Q
    ||||||||| ||||| | ||| ||     ||| ||||||||||||||||||| ||||||| |||||||||||||||||| | |||| ||||||||||| |    
T  23778310 aaatggataagagaccatttttattgtaatgtaatgtattgtatcaaacaatgttatttcttatttttaatatagtttgtattattttttctttgaaaat 23778211  T
Q  595 ttagccccacatataccaaaagtctggatccgcccctg 632  Q
    ||| |  || ||||| ||||||||||||||||| ||||    
T  23778210 ttaacttcaaatatatcaaaagtctggatccgctcctg 23778173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 518 - 629
Target Start/End: Original strand, 25032175 - 25032286
Alignment:
Q  518 tttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagt 617  Q
    ||||||||| ||||||||||||||||||| ||||||| |||||||||| || |||||| ||||||| |||||||| ||||||||||||| || |||||||    
T  25032175 tttcattgtaatgtattgtatcaaacaatgttatttcttatttttaatgtaatttgcattattgttcctttgaaaatttagccccacatgtatcaaaagt 25032274  T
Q  618 ctggatccgccc 629  Q
    || |||||||||    
T  25032275 ctagatccgccc 25032286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 474 - 580
Target Start/End: Original strand, 36478213 - 36478319
Alignment:
Q  474 tgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttg 573  Q
    |||||| |||||| ||||||||||||||||||||   |||| | ||| ||||| | ||||||||||||||||| ||||||| ||||||||||||||||||    
T  36478213 tgatgtcattttaactcattttcaacaaatggatcaaagacaattttaattgtaacgtattgtatcaaacaatattatttcttatttttaatatagtttg 36478312  T
Q  574 caatatt 580  Q
    |||||||    
T  36478313 caatatt 36478319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 460 - 546
Target Start/End: Original strand, 52308867 - 52308953
Alignment:
Q  460 ttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaat 546  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||| |||| || ||||||||| ||||| |||||||||||||    
T  52308867 ttaacaattaacaatgatgtcattttagctcattttcaacaaatggataggagatgattttcattgtaatgtagtgtatcaaacaat 52308953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 490 - 626
Target Start/End: Complemental strand, 30136644 - 30136508
Alignment:
Q  490 cattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttcttt 588  Q
    ||||||||||||||||||| ||||| | ||||||||  || ||||||||||||||||| ||||||| ||||||| |||| ||||||| |||| ||| |||    
T  30136644 cattttcaacaaatggataggagaccattttcattgaaattgtattgtatcaaacaatgttatttcttatttttcatattgtttgcattatt-ttttttt 30136546  T
Q  589 gaaattttagccccacatataccaaaagtctggatccg 626  Q
     ||||||||| | |||||||||| || |||| ||||||    
T  30136545 aaaattttagtcacacatataccgaatgtctagatccg 30136508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 490 - 626
Target Start/End: Complemental strand, 30142773 - 30142637
Alignment:
Q  490 cattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttcttt 588  Q
    ||||||||||||||||||| ||||| | ||||||||  || ||||||||||||||||| ||||||| ||||||| |||| ||||||| |||| ||| |||    
T  30142773 cattttcaacaaatggataggagaccattttcattgaaattgtattgtatcaaacaatgttatttcttatttttcatattgtttgcattatt-ttttttt 30142675  T
Q  589 gaaattttagccccacatataccaaaagtctggatccg 626  Q
     ||||||||| | |||||||||| || |||| ||||||    
T  30142674 aaaattttagtcacacatataccgaatgtctagatccg 30142637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 490 - 626
Target Start/End: Complemental strand, 30146195 - 30146059
Alignment:
Q  490 cattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttcttt 588  Q
    ||||||||||||||||||| ||||| | ||||||||  || ||||||||||||||||| ||||||| ||||||| |||| ||||||| |||| ||| |||    
T  30146195 cattttcaacaaatggataggagaccattttcattgaaattgtattgtatcaaacaatgttatttcttatttttcatattgtttgcattatt-ttttttt 30146097  T
Q  589 gaaattttagccccacatataccaaaagtctggatccg 626  Q
     ||||||||| | |||||||||| || |||| ||||||    
T  30146096 aaaattttagtcacacatataccgaatgtctagatccg 30146059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 418 - 539
Target Start/End: Complemental strand, 38573108 - 38572987
Alignment:
Q  418 ctaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgac 517  Q
    |||||||| |||  ||||||||||||||||| | ||| | | |||||||| | ||||| ||| |||||| ||||||||||||||||||||| |||||||     
T  38573108 ctaaatgatcgtcgtgtaacttatatagaaagagatgttctattaacaattagcaatgctgtcattttagctcattttcaacaaatggataggagacgat 38573009  T
Q  518 tttcattgtgatgtattgtatc 539  Q
    ||||||||| ||| ||||||||    
T  38573008 tttcattgtaatgcattgtatc 38572987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 472 - 568
Target Start/End: Original strand, 395922 - 396019
Alignment:
Q  472 aatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgt-gatgtattgtatcaaacaattttatttcatatttttaatata 568  Q
    ||||||||||||||| ||||||||||||||||||||   |||| | |||||| ||  ||||||||||||||||||| ||||||| |||||||| ||||    
T  395922 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttatttttagtata 396019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 378 - 506
Target Start/End: Original strand, 36477977 - 36478106
Alignment:
Q  378 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatata--gaaatatatgatgttttaacaataaacaatg 475  Q
    |||||||||||||||| ||| |||| ||| |||||||| ||||||||  ||| ||||||||||||||  |||| | ||| | |||||||||| |  ||||    
T  36477977 gtgaagagtaacctatgtaacaaaa-tggatgatcagtgactaaatgttcgttttgtaacttatatatagaaaaagatgttcttttaacaattagtaatg 36478075  T
Q  476 atgttattttacctcattttcaacaaatgga 506  Q
    |||| |||||| ||||||||||| |||||||    
T  36478076 atgtcattttagctcattttcaagaaatgga 36478106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 479 - 598
Target Start/End: Original strand, 6714403 - 6714522
Alignment:
Q  479 ttattttacctcattttcaacaaatggatatgagacgactttcattgtga-tgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 577  Q
    ||||||||  ||||||||||||||| |||||||||| | ||||||||| | ||||||  ||||||  || ||||||| ||||||||||||| ||  || |    
T  6714403 ttattttaattcattttcaacaaatagatatgagacaattttcattgtaattgtattacatcaaa-tatgttatttcttatttttaatataattaacatt 6714501  T
Q  578 attgtttctttgaaattttag 598  Q
    ||| ||||||| |||||||||    
T  6714502 attatttctttaaaattttag 6714522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 547 - 614
Target Start/End: Original strand, 35504208 - 35504275
Alignment:
Q  547 tttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaa 614  Q
    ||||| || ||||||||||||| |||||| |||| ||||||| ||||||||||| |||||| ||||||    
T  35504208 tttatgtcttatttttaatataatttgcattattttttcttttaaattttagccacacatacaccaaa 35504275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 630
Target Start/End: Original strand, 19832038 - 19832112
Alignment:
Q  556 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccc 630  Q
    ||||||||||||| |||||| |||||||||||  ||||||||||| ||| ||| |  || |||||||||||||||    
T  19832038 tatttttaatataatttgcattattgtttcttcaaaattttagcctcacttatccttaatgtctggatccgcccc 19832112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 400 - 526
Target Start/End: Original strand, 25070674 - 25070800
Alignment:
Q  400 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 499  Q
    |||||||||||||| |   ||||||| ||  ||||||||| ||| |||| | ||| | |||| ||||| | || |||||||||| || ||||||||||||    
T  25070674 aaaatgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaac 25070773  T
Q  500 aaatggatatgagacgactttcattgt 526  Q
    ||||||||   |||||| |||||||||    
T  25070774 aaatggatggcagacgattttcattgt 25070800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 400 - 526
Target Start/End: Complemental strand, 26903300 - 26903174
Alignment:
Q  400 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 499  Q
    |||||||||||||| |   ||||||| ||  ||||||||| ||| |||| | ||| | |||| ||||| | || |||||||||| || ||||||||||||    
T  26903300 aaaatgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaac 26903201  T
Q  500 aaatggatatgagacgactttcattgt 526  Q
    ||||||||   |||||| |||||||||    
T  26903200 aaatggatgacagacgattttcattgt 26903174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 400 - 526
Target Start/End: Original strand, 36617740 - 36617866
Alignment:
Q  400 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 499  Q
    |||||||||||||| |   ||||||| ||  ||||||||| ||| |||| | ||| | |||| ||||| | || |||||||||| || ||||||||||||    
T  36617740 aaaatgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaac 36617839  T
Q  500 aaatggatatgagacgactttcattgt 526  Q
    ||||||||   |||||| |||||||||    
T  36617840 aaatggatggcagacgattttcattgt 36617866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 567 - 623
Target Start/End: Complemental strand, 8034746 - 8034690
Alignment:
Q  567 tagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggat 623  Q
    ||||||||| |||| ||| |||||||||||||| |||||| |||| |||||||||||    
T  8034746 tagtttgcattattatttatttgaaattttagctccacatgtacctaaagtctggat 8034690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 482 - 523
Target Start/End: Complemental strand, 23795005 - 23794964
Alignment:
Q  482 ttttacctcattttcaacaaatggatatgagacgactttcat 523  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||    
T  23795005 ttttagctcattttcaacaaatggataagagacgattttcat 23794964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 2e-60; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 378 - 632
Target Start/End: Complemental strand, 44873456 - 44873203
Alignment:
Q  378 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 477  Q
    |||||||||||||||| ||| |||| |||||||| |||   ||||| ||| | |||||||||  ||||||| | ||| | |||||||||| | |||| ||    
T  44873456 gtgaagagtaacctatgtaacaaaa-tgggtgattagtggttaaataaccatcttgtaacttgcatagaaaaagatgttcttttaacaattagcaatcat 44873358  T
Q  478 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 577  Q
    ||||||||| |||||||||||||||||||||  |||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| |    
T  44873357 gttattttaactcattttcaacaaatggatagaagacgattttcattgtaatgtattgtatcaaacaatattatttcttatttttaatatagtttgcatt 44873258  T
Q  578 attgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 632  Q
    ||||||||||| |||||||||| || ||| |||| |||||||| |||||||||||    
T  44873257 attgtttctttaaaattttagctccgcatgtacctaaagtctgaatccgcccctg 44873203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 378 - 628
Target Start/End: Complemental strand, 29866336 - 29866084
Alignment:
Q  378 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatat-atgatgttttaacaataaacaatga 476  Q
    |||||||||||||||| ||| |||| |||||||||| |  |||||||||||| ||||||| |||| ||||| |  ||| | |||||| ||| || |||||    
T  29866336 gtgaagagtaacctatgtaacaaaa-tgggtgatcaatggctaaatgaccgtcttgtaacatatacagaaaaaagatgttcttttaaaaattaataatga 29866238  T
Q  477 tgttattttacctcattttcaacaaatggatatgagacgac--tttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgc 574  Q
    ||| |||||| ||||||||||||||||||||  |||| ||   ||||||||| ||||||||||||||||||| ||||||| ||||| |||||||||||||    
T  29866237 tgtcattttagctcattttcaacaaatggatcggagatgaaattttcattgtaatgtattgtatcaaacaatattatttcttatttataatatagtttgc 29866138  T
Q  575 aatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcc 628  Q
    | |||| ||||||| ||| |||||||||||||||||||||||||||||||||||    
T  29866137 attattttttctttaaaagtttagccccacatataccaaaagtctggatccgcc 29866084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 378 - 628
Target Start/End: Complemental strand, 10381592 - 10381343
Alignment:
Q  378 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 477  Q
    |||||||||||| ||| |||||||| ||||||||||||  ||||| ||| || |||||||||||||| ||| | ||| | |||||||||| |||||||||    
T  10381592 gtgaagagtaacttatgtaataaaa-tgggtgatcagtggctaaacgactgttttgtaacttatatataaacagatgttattttaacaattaacaatgat 10381494  T
Q  478 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 577  Q
    || ||||||  ||||||||||||||| |||| ||||| | ||| ||||| ||||||| ||||||||||| ||| ||| ||||||||||||||||| || |    
T  10381493 gtcattttagttcattttcaacaaatagataagagacaattttgattgtaatgtattatatcaaacaatgttacttcttatttttaatatagtttacatt 10381394  T
Q  578 attgtttctttgaaattttagccccacatataccaaaagtctggatccgcc 628  Q
    ||||||||||||||||||||||| |||| |||| |||  ||| ||||||||    
T  10381393 attgtttctttgaaattttagcctcacaaatactaaatatctagatccgcc 10381343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 434 - 632
Target Start/End: Original strand, 7681353 - 7681551
Alignment:
Q  434 taacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtat 533  Q
    ||||||||||||||| ||||| | |||||||||| | ||||||||| ||||||   ||||||||||||||||||| || |||| ||||||||| || |||    
T  7681353 taacttatatagaaagatatgttcttttaacaattagcaatgatgtcattttagaacattttcaacaaatggataggaaacgattttcattgtaatatat 7681452  T
Q  534 tgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 632  Q
    ||||||||||||| ||||||| | |||||||||||||||| | |||| |||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  7681453 tgtatcaaacaatgttatttcttgtttttaatatagtttgtattattatttctttgaaattttaaccacacatataccaaatgtctagatccgcccctg 7681551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 400 - 626
Target Start/End: Original strand, 32161349 - 32161573
Alignment:
Q  400 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 499  Q
    ||||||||| || ||| |||||||||| || ||||||||| |||| ||| | ||| | |||||||| | |  | ||||||||||||| ||||||||||||    
T  32161349 aaaatgggttattagtgactaaatgactgtcttgtaacttgtataaaaagagatgttcttttaacatttagtattgatgttattttatctcattttcaac 32161448  T
Q  500 aaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagc 599  Q
    |||  |||||||||||| |||  || | ||||||||||||||||||| ||||||| ||||||||||||| |||||| |||| |||||   ||||||||||    
T  32161449 aaa--gatatgagacgattttagttataatgtattgtatcaaacaatgttatttcttatttttaatataatttgcattattttttctccaaaattttagc 32161546  T
Q  600 cccacatataccaaaagtctggatccg 626  Q
    ||||||| || |||| |||| ||||||    
T  32161547 cccacatgtatcaaatgtctagatccg 32161573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 418 - 614
Target Start/End: Original strand, 24556878 - 24557074
Alignment:
Q  418 ctaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgac 517  Q
    |||||||||||| |||||||||||||| ||| |  |  | |||||||||| | |||| |||  | ||||| ||||||||||||||||||||  |  |||     
T  24556878 ctaaatgaccgtcttgtaacttatatataaaaaagttttcttttaacaattagcaataatgacaatttacttcattttcaacaaatggatagaaatcgat 24556977  T
Q  518 tttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaa 614  Q
    ||||||||| ||||||||||||||||||| ||||||  ||||||||||||| |||  | ||||||||||||||||||||  || |||||||| ||||    
T  24556978 tttcattgtaatgtattgtatcaaacaatgttatttattatttttaatataatttaaattattgtttctttgaaatttttaccacacatatatcaaa 24557074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 523 - 624
Target Start/End: Original strand, 6978410 - 6978511
Alignment:
Q  523 ttgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctgga 622  Q
    |||| ||||||| ||||||||||| ||||||| ||||||||||||||||| || || ||||||||||||| |||||||||||||||| |||||| |||||    
T  6978410 ttgtaatgtattatatcaaacaatattatttcttatttttaatatagtttacattactgtttctttgaaaatttagccccacatatatcaaaagactgga 6978509  T
Q  623 tc 624  Q
    ||    
T  6978510 tc 6978511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 460 - 546
Target Start/End: Original strand, 11993687 - 11993773
Alignment:
Q  460 ttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaat 546  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||| ||| |||| |||||||||||| ||||| |||||||||||||    
T  11993687 ttaacaattaacaatgatgtcattttagctcattttcaacaaatgtataggagatgactttcattgtaatgtagtgtatcaaacaat 11993773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 431 - 580
Target Start/End: Original strand, 29841154 - 29841304
Alignment:
Q  431 ttgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtga-t 529  Q
    |||||||||||||||||| ||||| | |||||| ||| | ||  | |||||||||| | |||||||||||||| |||||||||| | ||||||| | | |    
T  29841154 ttgtaacttatatagaaagatatgttcttttaaaaattagcaccgttgttattttaacccattttcaacaaatagatatgagacaattttcattataatt 29841253  T
Q  530 gtattgtatcaaacaattttatttcatatttttaatatagtttgcaatatt 580  Q
     |||| ||||||||||| ||||||| ||||||| |||||||||||| ||||    
T  29841254 atattatatcaaacaatgttatttcttattttttatatagtttgcattatt 29841304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 476 - 546
Target Start/End: Original strand, 34696984 - 34697054
Alignment:
Q  476 atgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaat 546  Q
    |||| |||||| ||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||    
T  34696984 atgtcattttatctcattttcaacaaatggatatgagacgattttcattgtaatatattgtatcaaacaat 34697054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 418 - 598
Target Start/End: Original strand, 7388102 - 7388283
Alignment:
Q  418 ctaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgac 517  Q
    |||||||||||| |||||||||||||||||||| ||| | |||||| ||| | ||||| | |||||||| | | |||||||||| |||| |  |||| |     
T  7388102 ctaaatgaccgtcttgtaacttatatagaaataaatgtttttttaaaaattagcaatgtttttattttagcacgttttcaacaattggaaagaagacaat 7388201  T
Q  518 tttcattgtga-tgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttag 598  Q
    ||| ||||| | ||||||  |||||||||| ||| ||| ||||||||||||| | |||| |||| ||||| ||| |||||||    
T  7388202 ttttattgtaattgtattacatcaaacaatgttaattcttatttttaatataatctgcattattttttctctgatattttag 7388283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 458 - 596
Target Start/End: Complemental strand, 2148477 - 2148338
Alignment:
Q  458 ttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcat 556  Q
    |||||| ||| | |||||||| |||||||  || ||||||||||||| |||  |||  | ||||||||| || |||||| ||||| |||| ||||||| |    
T  2148477 ttttaaaaattagcaatgatgctattttagttcgttttcaacaaatgtataatagattattttcattgtaattgtattgcatcaatcaatgttatttctt 2148378  T
Q  557 atttttaatatagtttgcaatattgtttctttgaaatttt 596  Q
    ||||||| |||| |||||| ||| ||||||||||||||||    
T  2148377 atttttagtataatttgcattatagtttctttgaaatttt 2148338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 400 - 514
Target Start/End: Original strand, 6802716 - 6802830
Alignment:
Q  400 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 499  Q
    ||||||||||||| ||  ||||||| |||| |||||||||||||| ||| | ||| | |||||||||| | |||||| || ||||||| ||||||| |||    
T  6802716 aaaatgggtgatcggtggctaaatgtccgtcttgtaacttatataaaaagagatgttattttaacaattagcaatgaagtcattttacttcatttttaac 6802815  T
Q  500 aaatggatatgagac 514  Q
    ||||| ||| |||||    
T  6802816 aaatgaataggagac 6802830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 472 - 575
Target Start/End: Complemental strand, 43421590 - 43421486
Alignment:
Q  472 aatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcatatttttaatatagt 570  Q
    |||| ||| ||||||  ||||||||||||||| ||||  |||||| ||| ||||| || |||||| |||||||||| ||||| | |||||||||||||||    
T  43421590 aatgttgtaattttagttcattttcaacaaatagatagaagacgatttttattgtaattgtattgcatcaaacaatgttattacttatttttaatatagt 43421491  T
Q  571 ttgca 575  Q
    |||||    
T  43421490 ttgca 43421486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 400 - 526
Target Start/End: Original strand, 45486158 - 45486284
Alignment:
Q  400 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 499  Q
    |||||||||||||| |   ||||||| ||  ||||||||| ||| |||| | ||| | |||| ||||| | || |||||||||| || ||||||||||||    
T  45486158 aaaatgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaac 45486257  T
Q  500 aaatggatatgagacgactttcattgt 526  Q
    ||||||||   |||||| |||||||||    
T  45486258 aaatggatggcagacgattttcattgt 45486284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 497 - 546
Target Start/End: Original strand, 35990865 - 35990914
Alignment:
Q  497 aacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaat 546  Q
    ||||||| |||| ||||||| ||||||||| |||||||||||||||||||    
T  35990865 aacaaatagataggagacgattttcattgttatgtattgtatcaaacaat 35990914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 614
Target Start/End: Original strand, 6802833 - 6802888
Alignment:
Q  559 ttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaa 614  Q
    ||||||||||||||||| ||||||||||||  |||||||| | || ||||||||||    
T  6802833 ttttaatatagtttgcattattgtttctttctaattttagtcacaaatataccaaa 6802888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 556 - 634
Target Start/End: Complemental strand, 7392203 - 7392126
Alignment:
Q  556 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctgat 634  Q
    ||||||||||||| |||||| |||| ||||||  ||||||||  || |||||||| ||| ||||||||||| |||||||    
T  7392203 tatttttaatataatttgcattattatttcttcaaaatttta-acctacatatactaaatgtctggatccgtccctgat 7392126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 631
Target Start/End: Original strand, 34697094 - 34697148
Alignment:
Q  577 tattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccct 631  Q
    |||| ||| ||| |||||||||| |||||| |||| |||||||||||||||||||    
T  34697094 tattatttatttaaaattttagctccacatgtacctaaagtctggatccgcccct 34697148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 410 - 507
Target Start/End: Complemental strand, 33235693 - 33235596
Alignment:
Q  410 atcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggat 507  Q
    |||||| | ||||||| |||  |||||||| |||||||| | ||| | ||  | |||| | ||||| |||||||||| ||||||||||||||||||||    
T  33235693 atcagtgattaaatgaacgtcgtgtaacttttatagaaagagatgtttttgaaccaattagcaatggtgttattttagctcattttcaacaaatggat 33235596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 9e-60; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 378 - 575
Target Start/End: Original strand, 9539548 - 9539744
Alignment:
Q  378 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 477  Q
    |||||||||||||||| ||| |||| ||| |||||| | ||||||||||||||| |||||||||||| ||| ||||||| |||||||||||| |||||||    
T  9539548 gtgaagagtaacctatgtaacaaaa-tggatgatcaatgactaaatgaccgtatcgtaacttatataaaaagatatgatcttttaacaataagcaatgat 9539646  T
Q  478 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgca 575  Q
     |||||||| ||||||||||||||||||||| |||| || ||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||    
T  9539647 attattttagctcattttcaacaaatggataagagatgattttcattgtaatgtattgtatcaaacgatgttatttcatatttttaatatagtttgca 9539744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 400 - 632
Target Start/End: Original strand, 27464214 - 27464446
Alignment:
Q  400 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 499  Q
    ||||||||||||||||  |||||| ||||| |||||||||||||||||| | ||  | |||||||||| |||||||| || ||||||  |||||||||||    
T  27464214 aaaatgggtgatcagtggctaaataaccgtcttgtaacttatatagaaaaagatattcttttaacaattaacaatgacgtcattttagttcattttcaac 27464313  T
Q  500 aaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagc 599  Q
    |||| ||||  |||||  ||| ||||||||||||||||||||||||  ||||||| |||||| ||||||||||| | | |||||| ||||||||||||||    
T  27464314 aaatagataatagacggttttaattgtgatgtattgtatcaaacaacgttatttcttattttaaatatagtttgtattgttgtttatttgaaattttagc 27464413  T
Q  600 cccacatataccaaaagtctggatccgcccctg 632  Q
    | ||||| ||||||| |||| ||||| ||||||    
T  27464414 ctcacatgtaccaaatgtctagatcctcccctg 27464446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 378 - 624
Target Start/End: Complemental strand, 8065151 - 8064906
Alignment:
Q  378 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 477  Q
    |||||||||||||||| |||||||| ||| |||||| |   ||||||||||| || ||||||||||| ||| | ||| | |||||||||| | |||||||    
T  8065151 gtgaagagtaacctatgtaataaaa-tggatgatcattggttaaatgaccgtcttataacttatataaaaagagatgttcttttaacaattagcaatgat 8065053  T
Q  478 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 577  Q
    || |||||  |||||| ||||| |||||||| ||||||| ||||||||| ||||||||||||||||||| | ||||| |||||||||||||||||| | |    
T  8065052 gtcattttcgctcattctcaaccaatggataggagacgattttcattgtaatgtattgtatcaaacaatgtaatttcttatttttaatatagtttgtatt 8064953  T
Q  578 attgtttctttgaaattttagccccacatataccaaaagtctggatc 624  Q
    |||| || |||   |||||| ||||||||||| | ||||||||||||    
T  8064952 attggtttttttttattttaaccccacatatatctaaagtctggatc 8064906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 473 - 575
Target Start/End: Original strand, 10781246 - 10781348
Alignment:
Q  473 atgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagttt 572  Q
    ||||||| |||||| | |||||||||||||| ||||| |||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||    
T  10781246 atgatgtcattttagcacattttcaacaaatagatataagacgattttcattgtaatgtattgtatcaaacaatattatttcttatttttaatatagttt 10781345  T
Q  573 gca 575  Q
    |||    
T  10781346 gca 10781348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 379 - 509
Target Start/End: Original strand, 10781104 - 10781235
Alignment:
Q  379 tgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatata--gaaatatatgatgttttaacaataaacaatga 476  Q
    ||||||||||||||| ||| |||| | ||||||||||  |||||||||||| ||||||||||||||  |||| ||||| | |||||||||| | ||| ||    
T  10781104 tgaagagtaacctatgtaacaaaa-taggtgatcagtggctaaatgaccgtcttgtaacttatatatagaaagatatgttcttttaacaattagcaacga 10781202  T
Q  477 tgttattttacctcattttcaacaaatggatat 509  Q
    | | |||||| ||||||||||||||||||||||    
T  10781203 tttcattttaactcattttcaacaaatggatat 10781235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 530 - 611
Target Start/End: Complemental strand, 23347876 - 23347795
Alignment:
Q  530 gtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatatacc 611  Q
    |||||| |||||||||| ||||||| ||| |||||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  23347876 gtattgcatcaaacaatgttatttcttatatttaatatagtttgcattattgtttatttgaaattttagccacacatatacc 23347795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 563 - 632
Target Start/End: Original strand, 9539762 - 9539831
Alignment:
Q  563 aatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 632  Q
    ||||||||||||| |||||||||||||||||||||  | ||||||||| |||||||||||||||||||||    
T  9539762 aatatagtttgcattattgtttctttgaaattttaatctcacatatactaaaagtctggatccgcccctg 9539831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 556 - 633
Target Start/End: Original strand, 43909377 - 43909454
Alignment:
Q  556 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctga 633  Q
    ||||||||||||| |||||| |||||||||||  ||||||||| ||||||||||| ||| ||||||||||||||||||    
T  43909377 tatttttaatataatttgcattattgtttcttcaaaattttagtcccacatatactaaatgtctggatccgcccctga 43909454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 634
Target Start/End: Original strand, 9516767 - 9516845
Alignment:
Q  556 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctgat 634  Q
    ||||||||||||| |||||| |||||||||||  |||||||||||||| |||||| ||| |||||||||||||| ||||    
T  9516767 tatttttaatataatttgcattattgtttcttcaaaattttagccccatatatactaaatgtctggatccgcccttgat 9516845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 539 - 609
Target Start/End: Complemental strand, 34912366 - 34912296
Alignment:
Q  539 caaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatata 609  Q
    |||| ||||||||||| |||||||||||||| ||| | |||||||||||| ||||||||||||| ||||||    
T  34912366 caaataattttatttcttatttttaatatagcttgtattattgtttctttaaaattttagccccgcatata 34912296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 556 - 633
Target Start/End: Original strand, 35438901 - 35438978
Alignment:
Q  556 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctga 633  Q
    ||||||||||||| |||||| |||||||||||  || |||||||||| | ||||| ||| ||||||||||||||||||    
T  35438901 tatttttaatataatttgcattattgtttcttcaaatttttagccccgcgtatactaaatgtctggatccgcccctga 35438978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 556 - 628
Target Start/End: Original strand, 281148 - 281219
Alignment:
Q  556 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcc 628  Q
    ||||||||||||| |||||| |||||||||||  ||||||||||||||||||||| ||| ||| |||||||||    
T  281148 tatttttaatataatttgcattattgtttcttcaaaattttagccccacatatactaaatgtc-ggatccgcc 281219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 435 - 510
Target Start/End: Complemental strand, 23353503 - 23353428
Alignment:
Q  435 aacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatg 510  Q
    |||||||||||||| | ||| | |||||| | | | |||| ||||||||||| ||||||||||||||||| |||||    
T  23353503 aacttatatagaaagaaatgttcttttaatatttagcaattatgttattttaactcattttcaacaaatgaatatg 23353428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 634
Target Start/End: Original strand, 39299269 - 39299340
Alignment:
Q  563 aatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctgat 634  Q
    ||||||||||||| |||||||| ||| |||||||| | |||||| |||| ||||||| ||| || |||||||    
T  39299269 aatatagtttgcattattgtttttttaaaattttaactccacatgtacctaaagtctagattcgaccctgat 39299340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 586 - 632
Target Start/End: Original strand, 44352815 - 44352861
Alignment:
Q  586 tttgaaattttagccccacatataccaaaagtctggatccgcccctg 632  Q
    ||||||||||||||| ||||||||| ||| |||| ||||||||||||    
T  44352815 tttgaaattttagccacacatatactaaatgtctagatccgcccctg 44352861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 378 - 443
Target Start/End: Complemental strand, 25031116 - 25031052
Alignment:
Q  378 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatat 443  Q
    ||||||| |||||||| ||| |||| |||||||| ||| |||||||||| || |||||||||||||    
T  25031116 gtgaagattaacctatgtaacaaaa-tgggtgataagtgactaaatgacggtcttgtaacttatat 25031052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 370
Target Start/End: Original strand, 40848867 - 40848968
Alignment:
Q  269 tttcacttgtgccgattgacccgcgtcaactgttcgacctgacccgacacccttcggtccgtacggtttggccggtttgggccggatattttatttttgt 368  Q
    ||||| |||| ||| || || ||| ||||| |||||||||||||| | | |||||||  | |||| || |||| |||||||||| ||||| |||||||||    
T  40848867 tttcatttgtaccgcttaactcgcatcaaccgttcgacctgacccaaaatccttcggctcatacgattcggccagtttgggccgaatattatatttttgt 40848966  T
Q  369 cc 370  Q
    ||    
T  40848967 cc 40848968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 5e-55; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 378 - 631
Target Start/End: Complemental strand, 36745110 - 36744855
Alignment:
Q  378 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatata--gaaatatatgatgttttaacaataaacaatg 475  Q
    |||||||||||| ||| ||| |||| ||||||||| ||  |||||||||||| ||||||||||||||  |||| | ||| | |||||||||| | |||||    
T  36745110 gtgaagagtaacatatgtaacaaaa-tgggtgatcggtggctaaatgaccgtcttgtaacttatatatagaaagagatgttcttttaacaattagcaatg 36745012  T
Q  476 atgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgca 575  Q
    |||| |||||| |||||||||||||||||||||| |||||| ||| ||||| || |||||||||||||||| ||||||| || |||||||||||||||||    
T  36745011 atgtcattttagctcattttcaacaaatggatataagacgattttaattgtaatttattgtatcaaacaatattatttcttacttttaatatagtttgca 36744912  T
Q  576 atattgtttctttgaaa-ttttagccccacatataccaaaagtctggatccgcccct 631  Q
     |||||||||||| ||| ||||||| |||||| |||| |||||||| ||||| ||||    
T  36744911 ttattgtttctttaaaatttttagctccacatgtacctaaagtctgaatccgtccct 36744855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 381 - 623
Target Start/End: Complemental strand, 43144731 - 43144488
Alignment:
Q  381 aagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgtt 480  Q
    ||||||||||||| ||| |||| ||||||| || | |||||||||| || ||||||| |||||||||| | ||| | |||||||||| ||||| |||||     
T  43144731 aagagtaacctatgtaacaaaa-tgggtgaccaatgactaaatgactgtcttgtaacatatatagaaaaagatgttcttttaacaattaacaaagatgtc 43144633  T
Q  481 attttacctcattttcaacaaatggatatgagacgac--tttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaata 578  Q
    | |||| ||||||||||||||||||||  |||| ||   ||||||||| ||||||||||||||||||| ||||||| ||||| ||||||||||||||  |    
T  43144632 actttagctcattttcaacaaatggattggagaagaaattttcattgtaatgtattgtatcaaacaatgttatttcttatttataatatagtttgcataa 43144533  T
Q  579 ttgtttctttgaaattttagccccacatataccaaaagtctggat 623  Q
    || ||| ||||||| ||||||||||||||||||||||||||||||    
T  43144532 ttttttttttgaaagtttagccccacatataccaaaagtctggat 43144488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 378 - 606
Target Start/End: Original strand, 34751012 - 34751239
Alignment:
Q  378 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 477  Q
    ||||||||||||| || ||| |||| ||| ||||| ||  |||||| ||||| |||||||||||||| ||| | |||   |||||||||| | |||||||    
T  34751012 gtgaagagtaacccatgtaacaaaa-tggatgatcggtggctaaataaccgttttgtaacttatatataaagagatgtaattttaacaattagcaatgat 34751110  T
Q  478 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 577  Q
    || |||||| |||||||||||||||| || | |||| || ||||||| | ||||||||||||||||||| ||| ||| ||||||||||||| |||||| |    
T  34751111 gtcattttagctcattttcaacaaatagacacgagatgattttcattttaatgtattgtatcaaacaatgttacttcttatttttaatataatttgcatt 34751210  T
Q  578 attgtttctttgaaattttagccccacat 606  Q
    |||||||||||||||||||||||||||||    
T  34751211 attgtttctttgaaattttagccccacat 34751239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 401 - 628
Target Start/End: Complemental strand, 25819228 - 25818997
Alignment:
Q  401 aaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaata--tatgatgttttaacaataaacaatgatgttattttacctcattttcaa 498  Q
    ||||||| ||||| |  |||||||||||| ||||||||||| ||||||||  |||| | |||||||  | |  ||| | ||||||||| || ||||||||    
T  25819228 aaatgggagatcaatggctaaatgaccgtcttgtaacttatgtagaaatagatatgttcttttaactgttagtaataaagttattttagcttattttcaa 25819129  T
Q  499 caaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgca--atattgtttctttgaaatttt 596  Q
    |||||||||| ||||| | |||||| || ||||||||| ||||||||| ||||||| ||||||||||||||||| ||  ||||| |||||||||||||||    
T  25819128 caaatggataggagacaattttcatcgtaatgtattgtttcaaacaatgttatttcctatttttaatatagtttacattatattttttctttgaaatttt 25819029  T
Q  597 agccccacatataccaaaagtctggatccgcc 628  Q
    |||||||||| ||||||| |||| ||||||||    
T  25819028 agccccacatgtaccaaatgtctagatccgcc 25818997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 481 - 632
Target Start/End: Complemental strand, 26459761 - 26459610
Alignment:
Q  481 attttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatatt 580  Q
    |||||| ||||||||||||||||||||| || |||| ||||||||| ||||||||||||||||||| || |||| |||||||||||| |||||||  |||    
T  26459761 attttagctcattttcaacaaatggataggacacgattttcattgtaatgtattgtatcaaacaatgttctttcttatttttaatatggtttgcataatt 26459662  T
Q  581 gtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 632  Q
    ||||||||||||||||||| | |||| |||| ||||||| |||||| |||||    
T  26459661 gtttctttgaaattttagctcaacatgtacctaaagtctcgatccgtccctg 26459610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 400 - 630
Target Start/End: Complemental strand, 5069995 - 5069761
Alignment:
Q  400 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 499  Q
    ||||| |||||| |||  ||||| ||| || ||||||| |||||| ||| | ||| | |||||||||| ||||||||| | |||||| ||||||||||||    
T  5069995 aaaattggtgattagtggctaaacgactgttttgtaacctatatataaagagatgttattttaacaattaacaatgatatcattttaactcattttcaac 5069896  T
Q  500 aaatggatatgagacgactttcattgtgatgt----attgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattt 595  Q
    |||| || |||||| || ||||||||| | ||    ||||||||||||||| ||| ||| ||||||||||||||||| || |||||||||||| || |||    
T  5069895 aaatagacatgagatgattttcattgtaacgtattaattgtatcaaacaatattacttcttatttttaatatagtttacattattgtttctttaaatttt 5069796  T
Q  596 tagccccacatataccaaaagtctggatccgcccc 630  Q
    | ||||||||| ||||||| |||| ||||| ||||    
T  5069795 ttgccccacatgtaccaaatgtctagatccacccc 5069761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 458 - 607
Target Start/End: Complemental strand, 5569105 - 5568955
Alignment:
Q  458 ttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcat 556  Q
    |||||| ||| | ||||| |||||||||| ||||||||||||||||||||| ||||| | ||||||||| || |||||| ||||| |||| ||||||| |    
T  5569105 ttttaaaaattagcaatgttgttattttaactcattttcaacaaatggatacgagacaattttcattgtaattgtattgcatcaaccaatgttatttctt 5569006  T
Q  557 atttttaatatagtttgcaatattgtttctttgaaattttagccccacata 607  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||| ||||||    
T  5569005 atttttaatatagtttgcattattttttcttttaaattttagccacacata 5568955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 471 - 600
Target Start/End: Original strand, 33824760 - 33824890
Alignment:
Q  471 caatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcatatttttaatatag 569  Q
    |||||||||||||||| ||||||||||||||||| ||| ||||||| ||||||||| || ||| || |||||||||| ||||||| |||||||||||||     
T  33824760 caatgatgttattttaactcattttcaacaaatgaataggagacgattttcattgtaattgtactgcatcaaacaatgttatttcttatttttaatatat 33824859  T
Q  570 tttgcaatattgtttctttgaaattttagcc 600  Q
    |||||| |||||||||||| |||||||||||    
T  33824860 tttgcattattgtttctttaaaattttagcc 33824890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 431 - 546
Target Start/End: Original strand, 7607248 - 7607363
Alignment:
Q  431 ttgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatg 530  Q
    |||||||||||||||||| | ||| | | |||||||| ||||||||||| |||||| |||||||||||||||||||||  |||||| ||| ||||| |||    
T  7607248 ttgtaacttatatagaaagagatgttctattaacaattaacaatgatgtcattttagctcattttcaacaaatggatagaagacgatttttattgtaatg 7607347  T
Q  531 tattgtatcaaacaat 546  Q
    ||||||||||||||||    
T  7607348 tattgtatcaaacaat 7607363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 518 - 632
Target Start/End: Original strand, 36633908 - 36634024
Alignment:
Q  518 tttcattgtgatgtattgtatcaaacaattttatttcatatttttaatata---gtttgcaatattgtttctttgaaattttagccccacatataccaaa 614  Q
    ||||||||| ||||||||||||||||||| ||||| | |||||||||||||    |||| | ||||| |||||||||| ||||||||||||||||  |||    
T  36633908 tttcattgtaatgtattgtatcaaacaatgttattacttatttttaatataattatttgtattattg-ttctttgaaaatttagccccacatatattaaa 36634006  T
Q  615 agtctggatccgcccctg 632  Q
    |||||||||||| |||||    
T  36634007 agtctggatccgtccctg 36634024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 431 - 597
Target Start/End: Original strand, 980137 - 980302
Alignment:
Q  431 ttgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgat- 529  Q
    |||||||||||| ||||| ||||  | |||||| | | ||||||||||||||||||   |||||||||||||| ||||  ||| || ||| ||||| ||     
T  980137 ttgtaacttatagagaaaaatat--tcttttaatagttaacaatgatgttattttagtacattttcaacaaatagataatagatgatttttattgtaatt 980234  T
Q  530 gtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaatttta 597  Q
    |||||  |||||||||| ||||||| ||||||||||||| |||||| |||| ||||||  ||||||||    
T  980235 gtattacatcaaacaatgttatttcttatttttaatataatttgcattattatttcttcaaaatttta 980302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 542 - 632
Target Start/End: Complemental strand, 22536966 - 22536876
Alignment:
Q  542 acaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 632  Q
    ||||| ||||||| | ||||||||| |||||||| |||||||||||| ||| ||||| ||||||| || |||||||||||||||| |||||    
T  22536966 acaatgttatttcttctttttaatacagtttgcattattgtttctttaaaaatttagtcccacatgtatcaaaagtctggatccgtccctg 22536876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 537 - 600
Target Start/End: Original strand, 35676348 - 35676410
Alignment:
Q  537 atcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagcc 600  Q
    |||| ||||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||||    
T  35676348 atcatacaatattatttcttatttttaatatagtttgcattatt-tttctttgaaattttagcc 35676410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 566 - 632
Target Start/End: Original strand, 7607392 - 7607458
Alignment:
Q  566 atagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 632  Q
    |||||||| | |||| ||| |||||||||||||| |||||| |||| ||||||||||||| ||||||    
T  7607392 atagtttgtattattatttatttgaaattttagctccacatgtacctaaagtctggatccacccctg 7607458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 434 - 504
Target Start/End: Complemental strand, 29670090 - 29670020
Alignment:
Q  434 taacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatg 504  Q
    ||||||||||||||| | ||| | |||||||||| | |||| ||||||||||| || ||||||||||||||    
T  29670090 taacttatatagaaaaagatgttcttttaacaattatcaataatgttattttagcttattttcaacaaatg 29670020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 489 - 580
Target Start/End: Complemental strand, 39509220 - 39509128
Alignment:
Q  489 tcattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcatatttttaatatagtttgcaatatt 580  Q
    ||||||||||||||| |||   |||| | ||||||||| || ||||||||||||||||| |||| || ||||||| ||||| |||||| ||||    
T  39509220 tcattttcaacaaattgatggaagacaattttcattgtaattgtattgtatcaaacaatgttatatcttatttttcatataatttgcattatt 39509128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 5e-55; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 378 - 631
Target Start/End: Complemental strand, 32033145 - 32032893
Alignment:
Q  378 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 477  Q
    |||||||||||||||| ||| |||| ||| |||||| | ||||| ||||| | |||||||||||||||||| | ||| | |||||||||| |  | ||||    
T  32033145 gtgaagagtaacctatgtaacaaaa-tggatgatcactgactaattgaccatcttgtaacttatatagaaagagatgttcttttaacaattagtactgat 32033047  T
Q  478 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 577  Q
    || |||||| |||||||| |||||||||||| | ||||| ||||||| | ||||||||||||||||||| ||||||| |||||||||||||| ||| | |    
T  32033046 gtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtatcaaacaatgttatttcttatttttaatataggttgtatt 32032947  T
Q  578 attgtttctttgaaattttagccccacatataccaaaagtctggatccgcccct 631  Q
    ||||||| ||| ||| ||||||| ||||| ||||||||||||||||||||||||    
T  32032946 attgtttatttaaaaatttagcctcacatgtaccaaaagtctggatccgcccct 32032893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 431 - 631
Target Start/End: Complemental strand, 7700457 - 7700258
Alignment:
Q  431 ttgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatg 530  Q
    |||||||||||||||||| | ||| | |||||||||| | ||||||||| |||||| ||||||||||||| ||| |||||||| || ||||||||  |||    
T  7700457 ttgtaacttatatagaaaga-atgttcttttaacaattagcaatgatgtcattttagctcattttcaacatatgaatatgagatgattttcattgcaatg 7700359  T
Q  531 tattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccc 630  Q
    |||||||||||||||| ||||||| ||||||| ||||||||| || |||||||||||||||||||||||| |||||||| |||| || | ||||||||||    
T  7700358 tattgtatcaaacaatgttatttcttattttttatatagtttacattattgtttctttgaaattttagccacacatatatcaaatgtgtagatccgcccc 7700259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 419 - 625
Target Start/End: Original strand, 34878614 - 34878821
Alignment:
Q  419 taaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgact 518  Q
    ||||||| ||| |||||||||||||||||||||||| | |||||||||| |||||||| ||  ||||| ||||||||||||||||| |||||| |  | |    
T  34878614 taaatgatcgtcttgtaacttatatagaaatatatgttcttttaacaattaacaatgacgtctttttaactcattttcaacaaatgaatatgaaagaatt 34878713  T
Q  519 ttcattgtgatgtattgtatcaaac-aattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagt 617  Q
    |  ||||| ||  |||||||||||| ||| ||||||| |||||||| |||||| | || |||||||||||| |||||||||||||| |||||||||| ||    
T  34878714 tatattgtaattcattgtatcaaacaaatcttatttcttatttttagtatagtcttcattattgtttctttaaaattttagccccatatataccaaatgt 34878813  T
Q  618 ctggatcc 625  Q
    || |||||    
T  34878814 ctagatcc 34878821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 419 - 619
Target Start/End: Original strand, 18703633 - 18703822
Alignment:
Q  419 taaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgact 518  Q
    ||||||||||| ||||||||||| |||||| | ||| | |||||||||| | ||||| | |||||||  |||||||| |||||||||||| ||||| | |    
T  18703633 taaatgaccgtcttgtaacttatttagaaagagatgttcttttaacaattagcaatgtttttatttttgctcatttttaacaaatggataggagacaatt 18703732  T
Q  519 ttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtc 618  Q
    ||||||||     |||| |||||||||| |       |||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |||| |||    
T  18703733 ttcattgt----aattgcatcaaacaatgt-------tatttttaatatagtttgcattattgtttctttgaaattttagccacacgtatatcaaatgtc 18703821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 431 - 546
Target Start/End: Complemental strand, 34190145 - 34190030
Alignment:
Q  431 ttgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatg 530  Q
    |||||||||||||||||| | ||| | | |||||||| | ||||||| | ||||||  |||||||||||||||||||| ||||||| ||||||||| |||    
T  34190145 ttgtaacttatatagaaagagatgttctattaacaattagcaatgatatcattttagttcattttcaacaaatggataggagacgattttcattgtaatg 34190046  T
Q  531 tattgtatcaaacaat 546  Q
    ||||||||||||||||    
T  34190045 tattgtatcaaacaat 34190030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 518 - 631
Target Start/End: Complemental strand, 11562194 - 11562084
Alignment:
Q  518 tttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagt 617  Q
    |||| |||| ||||| ||||||||||||| ||||||| |||||||||||||   |||| |||||||||||||||| | ||||| ||||| || |||||||    
T  11562194 tttcgttgtaatgtactgtatcaaacaatgttatttcttatttttaatata---tgcattattgtttctttgaaaatctagcctcacatgtatcaaaagt 11562098  T
Q  618 ctggatccgcccct 631  Q
    ||||||||||||||    
T  11562097 ctggatccgcccct 11562084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 477 - 619
Target Start/End: Original strand, 27447736 - 27447879
Alignment:
Q  477 tgttattttacctcattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcatatttttaatatagtttgca 575  Q
    |||||||||| ||| ||| ||| |||| |||||||||| | ||||||||| || |||||  |||||||||| ||||||| ||||||||| ||| | ||||    
T  27447736 tgttattttagctcgtttccaataaatagatatgagacaattttcattgtaattgtattacatcaaacaatattatttcttatttttaacataatctgca 27447835  T
Q  576 atattgtttctttgaaattttagccccacatataccaaaagtct 619  Q
     |||| ||||||||||||||||||| |||||||| |||| ||||    
T  27447836 ttattttttctttgaaattttagccacacatatatcaaatgtct 27447879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 469 - 611
Target Start/End: Complemental strand, 38417871 - 38417728
Alignment:
Q  469 aacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcatatttttaatat 567  Q
    ||||||| || |||||||  |||||||||||||||||||| ||||| | ||||| ||| || |||||| ||||| |||  ||||||| ||||||||||||    
T  38417871 aacaatgttgctattttaaatcattttcaacaaatggataggagacaattttcactgtaattgtattgcatcaaccaaagttatttcttatttttaatat 38417772  T
Q  568 agtttgcaatattgtttctttgaaattttagccccacatatacc 611  Q
    || ||||| || | ||||||| ||||||||| | ||||||||||    
T  38417771 agcttgcattagtttttctttaaaattttaggcacacatatacc 38417728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 418 - 516
Target Start/End: Original strand, 3357064 - 3357161
Alignment:
Q  418 ctaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacga 516  Q
    |||||| ||||| |||||||||||||||||| | ||| | |||||||||| | ||||||||| |||||| ||||||||||||||||||||| |||||||    
T  3357064 ctaaatcaccgtcttgtaacttatatagaaagagatgtt-ttttaacaattagcaatgatgtcattttatctcattttcaacaaatggataggagacga 3357161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 540 - 619
Target Start/End: Original strand, 16639293 - 16639372
Alignment:
Q  540 aaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtct 619  Q
    ||||||| | ||||| |||||||||||||||||| | |||||||||||| ||||||||| |  |||||||||||| ||||    
T  16639293 aaacaatgtaatttcttatttttaatatagtttgtattattgtttctttaaaattttagtcatacatataccaaatgtct 16639372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 567 - 632
Target Start/End: Complemental strand, 18458763 - 18458698
Alignment:
Q  567 tagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 632  Q
    ||||||||| |||| ||| ||||| |||||||| ||||||||||| |||| |||||||||||||||    
T  18458763 tagtttgcattattatttatttgacattttagctccacatatacctaaagcctggatccgcccctg 18458698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 569 - 632
Target Start/End: Complemental strand, 6141444 - 6141381
Alignment:
Q  569 gtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 632  Q
    ||||||| |||| ||| |||||||||||||| |||||| |||| |||||||||||| |||||||    
T  6141444 gtttgcattattatttatttgaaattttagctccacatgtacctaaagtctggatctgcccctg 6141381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 458 - 511
Target Start/End: Original strand, 16639187 - 16639240
Alignment:
Q  458 ttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatga 511  Q
    |||||||||| |||||||||| |||||||  | |||||||||||||||||||||    
T  16639187 ttttaacaatcaacaatgatgctattttagttgattttcaacaaatggatatga 16639240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 2e-48; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 378 - 630
Target Start/End: Original strand, 33941572 - 33941814
Alignment:
Q  378 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 477  Q
    |||||||||| ||||| |||||||  ||||| ||||||  |||||||||||| |||||||||||||||||| | ||| | |||||||||| | |||||||    
T  33941572 gtgaagagtagcctatgtaataaa--tgggtaatcagtggctaaatgaccgtcttgtaacttatatagaaagaaatgttcttttaacaattagcaatgat 33941669  T
Q  478 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 577  Q
    ||||||||| |||||||||||||||| |||| |||         ||||| ||||||| ||||||||||| ||||||| |||||||||||||||||| | |    
T  33941670 gttattttaactcattttcaacaaattgataggag---------attgtaatgtattttatcaaacaatgttatttcttatttttaatatagtttgtatt 33941760  T
Q  578 attgtttctttgaa-attttagccccacatataccaaaagtctggatccgcccc 630  Q
    ||||||| ||| ||  ||||||| ||||||||||| ||||||||||||||||||    
T  33941761 attgtttttttaaattttttagctccacatatacctaaagtctggatccgcccc 33941814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 378 - 600
Target Start/End: Original strand, 30074563 - 30074786
Alignment:
Q  378 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 477  Q
    |||||||||||||||| ||| |||| || ||||||| |  |||||||||| | |||||||||||||||||| | ||| | |||||||||| |||||||||    
T  30074563 gtgaagagtaacctatgtaacaaaa-tgagtgatcaatggctaaatgaccatcttgtaacttatatagaaagagatgttcttttaacaattaacaatgat 30074661  T
Q  478 gttattttacctcattttcaacaaatggatatgagac--gactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgca 575  Q
    || |||||| || |||||||||||||||||| |||||  || ||| ||||| |||||||||||||||| || || |||| ||||||||||||| ||||||    
T  30074662 gtcattttaacttattttcaacaaatggataggagacgagattttgattgtaatgtattgtatcaaacgatgttgtttcttatttttaatataatttgca 30074761  T
Q  576 atattgtttctttgaaattttagcc 600  Q
     |||  ||||||||||| |||||||    
T  30074762 ttatcttttctttgaaaatttagcc 30074786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 489 - 597
Target Start/End: Original strand, 34346852 - 34346960
Alignment:
Q  489 tcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttcttt 588  Q
    |||||||| ||||||||||||||||||| ||||| | | ||||||||||| ||||||| ||||||| |||||||||| ||||||||| ||||||||||||    
T  34346852 tcattttccacaaatggatatgagacgattttcactttaatgtattgtataaaacaatgttatttcttatttttaatgtagtttgcattattgtttcttt 34346951  T
Q  589 gaaatttta 597  Q
    |||||||||    
T  34346952 gaaatttta 34346960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 472 - 632
Target Start/End: Original strand, 26824465 - 26824628
Alignment:
Q  472 aatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtga-tgtattgtatcaaacaattttatttcatatttttaatatagt 570  Q
    |||||| ||||||||||||||||||||||||| |||| ||||||| ||||||||| | ||||||| |||||| ||| ||||||| |||||||||| ||||    
T  26824465 aatgatattattttacctcattttcaacaaatcgataggagacgattttcattgtaattgtattgcatcaaataatattatttcttatttttaatttagt 26824564  T
Q  571 ttgc--aatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 632  Q
    || |  | ||||||||||||| |||| ||| |  ||||||| |||| ||||||||| |||||||    
T  26824565 ttacatattattgtttctttggaattgtagtcatacatatatcaaatgtctggatcggcccctg 26824628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 378 - 566
Target Start/End: Original strand, 2945330 - 2945519
Alignment:
Q  378 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 477  Q
    ||||||||||||||| |||| |||| ||| ||||||||   ||||||| ||| ||||| ||||||||||||   ||  | |||||||||| | |||||||    
T  2945330 gtgaagagtaacctacataacaaaa-tggatgatcagtggttaaatgatcgtcttgtagcttatatagaaagtgattttcttttaacaattagcaatgat 2945428  T
Q  478 gttattttacctcattttcaacaaatggatatgagacgac--tttcattgtgatgtattgtatcaaacaattttatttcatatttttaata 566  Q
    || ||||||  ||||||||||||||| |||| |||||||   ||| ||||| ||||||||||||||||||| ||||||| |||||||||||    
T  2945429 gtcattttaggtcattttcaacaaatagataggagacgagatttttattgtaatgtattgtatcaaacaatgttatttcttatttttaata 2945519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 458 - 629
Target Start/End: Original strand, 46090209 - 46090380
Alignment:
Q  458 ttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcata 557  Q
    |||||||||| |  || ||||| ||||||  |||||||||||||||| ||||||||||| ||||||||| |||||| ||| |||||||| ||||||  ||    
T  46090209 ttttaacaattactaaggatgtcattttaattcattttcaacaaatgaatatgagacgattttcattgtaatgtatcgtaccaaacaatgttatttttta 46090308  T
Q  558 tttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgccc 629  Q
    |||||||||||||||| |  |||||||||||| ||| ||||   |||||||| |||| ||||  ||||||||    
T  46090309 tttttaatatagtttgtatcattgtttctttgtaatattagttacacatatatcaaatgtctttatccgccc 46090380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 381 - 542
Target Start/End: Complemental strand, 24658590 - 24658431
Alignment:
Q  381 aagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgtt 480  Q
    ||||||||||||| ||| |||| ||| ||||| ||  |||||||||||| |||||||||||||||||| | ||| | | |||||| ||  |||||||||     
T  24658590 aagagtaacctatgtaacaaaa-tggatgatcggtggctaaatgaccgtcttgtaacttatatagaaagagatgttctattaacattag-caatgatgtc 24658493  T
Q  481 attttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaa 542  Q
    |||||| ||||||||||||||||||||| || |||| ||||||||| || ||||||||||||    
T  24658492 attttaactcattttcaacaaatggataggaaacgattttcattgtaatatattgtatcaaa 24658431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 471 - 632
Target Start/End: Original strand, 32221862 - 32222026
Alignment:
Q  471 caatgatgttattttacctcattttcaacaaatggatatgagac--gactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatata 568  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||  || | ||| ||| || ||||||| |||||||| ||||||| |||||||||||||    
T  32221862 caatgatgtcattttaactcattttcaacaaatggataggagacgagattctcaatgtaatttattgtaccaaacaatgttatttcttatttttaatata 32221961  T
Q  569 gtttgcaatattgt-ttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 632  Q
     | | || |||| | || ||| ||| ||||||||||||| ||| |||||||||||||||||||||    
T  32221962 atatacattattttattttttaaaaatttagccccacatgtacaaaaagtctggatccgcccctg 32222026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 546
Target Start/End: Original strand, 38300330 - 38300480
Alignment:
Q  400 aaaatgggtgatcagtaactaaatgaccgtattgtaactt----atatagaaatatatgatgttttaacaataaacaatgatgttattttacctcatttt 495  Q
    ||||||| ||||||||  |||||||||||| |||||||||    ||||||||||| ||| | | |||||||| | ||||| ||| |||||| ||||||||    
T  38300330 aaaatggatgatcagtggctaaatgaccgtcttgtaacttacttatatagaaatagatgttttattaacaattatcaatgctgtcattttagctcatttt 38300429  T
Q  496 caacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaat 546  Q
    ||||||||||||| ||||||| ||||||||| ||  |||||||||||||||    
T  38300430 caacaaatggataggagacgattttcattgtaatacattgtatcaaacaat 38300480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 418 - 580
Target Start/End: Complemental strand, 25233079 - 25232916
Alignment:
Q  418 ctaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgac 517  Q
    |||||||| ||| |||||| ||||||| ||| | ||| | |||||| ||| | ||  | |||||||||| ||||||||||||||||||||| ||||| |     
T  25233079 ctaaatgatcgtcttgtaatttatataaaaagaaatgttcttttaaaaattagcagcgctgttattttaactcattttcaacaaatggataggagacaat 25232980  T
Q  518 tttcattgtgatg-tattgtatcaaacaattttatttcatatttttaatatagtttgcaatatt 580  Q
    ||||||||| ||  |||||||||||||||| ||||||| ||||||| |||||||||||| ||||    
T  25232979 tttcattgtaattatattgtatcaaacaatgttatttcttatttttcatatagtttgcattatt 25232916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 431 - 629
Target Start/End: Complemental strand, 27080534 - 27080339
Alignment:
Q  431 ttgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatg 530  Q
    |||||||||||||| ||| ||||| | |||||||||| | || |||||| |||||| ||||||||||||||||  ||| ||||||| | | |||||  ||    
T  27080534 ttgtaacttatataaaaagatatgttcttttaacaattagca-tgatgtcattttagctcattttcaacaaataaataggagacgattgttattgt--tg 27080438  T
Q  531 tattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgccc 629  Q
    ||||||||||||||||  |||||| ||||||||| |||||||    ||||||||| ||||||||||| |||||  | ||||||| ||||  ||||||||    
T  27080437 tattgtatcaaacaatgatatttcttatttttaacatagtttaatttattgtttcattgaaattttatccccatttgtaccaaatgtcttaatccgccc 27080339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 431 - 629
Target Start/End: Original strand, 27197767 - 27197962
Alignment:
Q  431 ttgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatg 530  Q
    |||||||||||||| ||| ||||| | |||||||||| | || |||||| |||||| ||||||||||||||||  ||| ||||||| | | |||||  ||    
T  27197767 ttgtaacttatataaaaagatatgttcttttaacaattagca-tgatgtcattttagctcattttcaacaaataaataggagacgattgttattgt--tg 27197863  T
Q  531 tattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgccc 629  Q
    ||||||||||||||||  |||||| ||||||||| |||||||    ||||||||| ||||||||||| |||||  | ||||||| ||||  ||||||||    
T  27197864 tattgtatcaaacaatgatatttcttatttttaacatagtttaatttattgtttcattgaaattttatccccatttgtaccaaatgtcttaatccgccc 27197962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 458 - 563
Target Start/End: Complemental strand, 39785590 - 39785484
Alignment:
Q  458 ttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtga-tgtattgtatcaaacaattttatttcat 556  Q
    |||||||||| | ||||| |||||||||| |||||||| ||||||||||||  |||||| ||||||||| | ||||||| |||||||||| ||||||| |    
T  39785590 ttttaacaattatcaatgttgttattttagctcatttttaacaaatggatagtagacgattttcattgtaattgtattgcatcaaacaatgttatttctt 39785491  T
Q  557 attttta 563  Q
    |||||||    
T  39785490 attttta 39785484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 556 - 632
Target Start/End: Complemental strand, 7899478 - 7899402
Alignment:
Q  556 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 632  Q
    ||||||||||||| |||||| |||||||||||  ||||||||||||||||||||| ||| || ||||||||||||||    
T  7899478 tatttttaatataatttgcattattgtttcttcaaaattttagccccacatatactaaatgtttggatccgcccctg 7899402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 556 - 629
Target Start/End: Complemental strand, 26050158 - 26050085
Alignment:
Q  556 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgccc 629  Q
    ||||||||||||| |||||| |||||||||||  ||||||||||||||||||||  ||| ||||||||||||||    
T  26050158 tatttttaatataatttgcattattgtttcttcaaaattttagccccacatatattaaatgtctggatccgccc 26050085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 556 - 625
Target Start/End: Complemental strand, 26059517 - 26059448
Alignment:
Q  556 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatcc 625  Q
    ||||||||||||| |||||| |||||||||||  ||||||||||||||||||||  ||| ||||||||||    
T  26059517 tatttttaatataatttgcattattgtttcttcaaaattttagccccacatatattaaatgtctggatcc 26059448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 378 - 526
Target Start/End: Complemental strand, 1691818 - 1691671
Alignment:
Q  378 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 477  Q
    |||||||||||| ||| ||| |||| ||| ||||||||   |||| | | || |||||||||||||| ||| | ||| | | |||||||| |||||||||    
T  1691818 gtgaagagtaacatatgtaacaaaattgg-tgatcagtggataaacggctgtcttgtaacttatatataaagagatgttctattaacaattaacaatgat 1691720  T
Q  478 gttattttacctcattttcaacaaatggatatgagacgactttcattgt 526  Q
     | |||||| ||||||||||||||||||||| |||| || || ||||||    
T  1691719 atcattttaactcattttcaacaaatggataggagatgatttacattgt 1691671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 477 - 538
Target Start/End: Original strand, 40716946 - 40717008
Alignment:
Q  477 tgttattttacctcattttcaacaaatggatatgagacgactttcattgtga-tgtattgtat 538  Q
    |||||||||||||||||||||||||||||||||||||| | ||| ||||| | ||||||||||    
T  40716946 tgttattttacctcattttcaacaaatggatatgagacaatttttattgtaattgtattgtat 40717008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 567 - 632
Target Start/End: Complemental strand, 10702724 - 10702659
Alignment:
Q  567 tagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 632  Q
    ||||||||| |||| ||| ||||| |||||||| ||||||||||| |||||| |||||||||||||    
T  10702724 tagtttgcattattatttatttgacattttagctccacatatacctaaagtcaggatccgcccctg 10702659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 632
Target Start/End: Original strand, 2945846 - 2945917
Alignment:
Q  558 tttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 632  Q
    |||||||||||||||||| ||||   ||||||||| ||||||| |  || |||||||||||||||||||||||||    
T  2945846 tttttaatatagtttgcattatt---tctttgaaaatttagcctcgtatgtaccaaaagtctggatccgcccctg 2945917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 539 - 599
Target Start/End: Complemental strand, 49144016 - 49143956
Alignment:
Q  539 caaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagc 599  Q
    |||||||| ||||||| |||||||||||||||||| | |||| ||||||| ||||||||||    
T  49144016 caaacaatgttatttcttatttttaatatagtttgtattattttttctttaaaattttagc 49143956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 400 - 507
Target Start/End: Original strand, 43265897 - 43266004
Alignment:
Q  400 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 499  Q
    |||||||||||||| |   ||||||| ||  ||||||||| |||||||| | ||| | |||| ||||| | || |||||||||| || ||||||||||||    
T  43265897 aaaatgggtgatcaatggttaaatgatcggcttgtaacttttatagaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaac 43265996  T
Q  500 aaatggat 507  Q
    ||||||||    
T  43265997 aaatggat 43266004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 567 - 629
Target Start/End: Original strand, 10703218 - 10703280
Alignment:
Q  567 tagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgccc 629  Q
    ||||||||| |||| ||| ||||| |||||| | ||||||||||| |||||||||||||||||    
T  10703218 tagtttgcattattatttatttgacattttaactccacatatacctaaagtctggatccgccc 10703280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 410 - 507
Target Start/End: Original strand, 10512018 - 10512115
Alignment:
Q  410 atcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggat 507  Q
    |||||| | |||||||||||  |||||||| |||||||| | ||| | ||  | |||| | ||||| |||||||||| ||||||||||||||||||||    
T  10512018 atcagtgattaaatgaccgttgtgtaacttttatagaaagagatgttcttgaaccaattagcaatggtgttattttagctcattttcaacaaatggat 10512115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 626
Target Start/End: Complemental strand, 1691598 - 1691539
Alignment:
Q  567 tagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccg 626  Q
    |||||| || |||| ||| |||||||||||||| ||||||||||| ||||||| ||||||    
T  1691598 tagttttcattattatttatttgaaattttagctccacatatacctaaagtctcgatccg 1691539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 526
Target Start/End: Original strand, 39780992 - 39781087
Alignment:
Q  431 ttgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgt 526  Q
    ||||||||| ||| |||| | ||| | |||| ||||| | || |||||||||| || ||||||||||||||||||||   |||||| |||||||||    
T  39780992 ttgtaacttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttcattgt 39781087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 3e-47; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 459 - 619
Target Start/End: Original strand, 16461644 - 16461804
Alignment:
Q  459 tttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatat 558  Q
    ||||||||| ||||||||||| |||| | ||||||||||||||||| ||| ||||| | ||||||||| || |||||||||||||||| ||||||| |||    
T  16461644 tttaacaattaacaatgatgtcatttaagctcattttcaacaaatgaataggagacaattttcattgtaatatattgtatcaaacaatgttatttcttat 16461743  T
Q  559 ttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtct 619  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||| ||||    
T  16461744 ttttaatatagtttgcattattgtttctttgaaattttagccccatatatatcaaacgtct 16461804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 378 - 630
Target Start/End: Original strand, 14607698 - 14607926
Alignment:
Q  378 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 477  Q
    |||||||||||||||| |||  ||| | | |||| ||| |||||||||  |||||||||||| ||| |||| ||||||| ||||||||||||  ||||||    
T  14607698 gtgaagagtaacctatgtaaccaaa-tagatgattagtgactaaatgaatgtattgtaacttgtattgaaagatatgat-ttttaacaataagaaatgat 14607795  T
Q  478 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 577  Q
    ||||||||| ||||||||||||||||||||| ||||  | ||||||||| |||||||||||||||||||                      ||||||| |    
T  14607796 gttattttagctcattttcaacaaatggataggagaaaattttcattgtaatgtattgtatcaaacaat----------------------gtttgcatt 14607873  T
Q  578 attgtttctttgaaattttagccccacatataccaaaagtctggatccgcccc 630  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14607874 attgtttctttgaaattttagccccccatataccaaaagtctggatccgcccc 14607926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 439 - 598
Target Start/End: Complemental strand, 6689316 - 6689160
Alignment:
Q  439 tatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtat 538  Q
    |||||||||| | ||||| |||||||||| | ||||||||| |||||| |||| |||||| ||||||||| ||||||| ||||||||| |||||||||||    
T  6689316 tatatagaaagagatgatcttttaacaattagcaatgatgtcattttagctcaatttcaataaatggataggagacgattttcattgtaatgtattgtat 6689217  T
Q  539 caaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttag 598  Q
    |||||  | |||||   | ||||||||||| |||||| ||||||||||||| ||||||||    
T  6689216 caaaccttgttatt---tttttttaatataatttgcattattgtttctttgtaattttag 6689160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 518 - 623
Target Start/End: Original strand, 2919959 - 2920062
Alignment:
Q  518 tttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagt 617  Q
    ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| |||  ||||||||||| ||||||||||||| || |||||||    
T  2919959 tttcattgtaatgtattgtatcaaacaatgttatttcttatttttaatatagtttgcattat--tttctttgaaaatttagccccacatgtatcaaaagt 2920056  T
Q  618 ctggat 623  Q
    ||||||    
T  2920057 ctggat 2920062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 458 - 626
Target Start/End: Original strand, 1975266 - 1975435
Alignment:
Q  458 ttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcat 556  Q
    |||||| ||| | ||||| | |||||||| |||||||||| ||||| || ||||||| | ||||||||| || |||||| ||||| |||| ||||||  |    
T  1975266 ttttaaaaattagcaatgctattattttaactcattttcatcaaatagacatgagacaattttcattgttattgtattgaatcaaccaatgttatttatt 1975365  T
Q  557 atttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccg 626  Q
    |||||||||||||||| || |||| ||||||| |||||||| || |||||||||| || |||| ||||||    
T  1975366 atttttaatatagtttacattattttttctttaaaattttaaccacacatataccgaatgtctagatccg 1975435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 400 - 595
Target Start/End: Complemental strand, 30705438 - 30705248
Alignment:
Q  400 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 499  Q
    ||||| ||||||||||  |||||||||| | ||||||| || | ||||| ||||  | |||| ||||| |||| ||| |||||||||  |||| ||||||    
T  30705438 aaaatcggtgatcagtggctaaatgaccatcttgtaacatacacagaaagatattttcttttcacaattaacattgaagttattttaaatcatgttcaac 30705339  T
Q  500 aaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattt 595  Q
    |||||||||  |||||| ||| ||     |||||||||||||||||| ||||||| |||||||| |||| |||| |  ||  ||||||||||||||    
T  30705338 aaatggataatagacgatttttat-----tgtattgtatcaaacaatgttatttcttatttttagtataatttgaatcataatttctttgaaattt 30705248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 408 - 546
Target Start/End: Complemental strand, 21883399 - 21883261
Alignment:
Q  408 tgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggat 507  Q
    |||||||| ||||| ||||| | |||||||||||||||||| | ||  | | | |||||| | ||||| ||| |||||  ||||||||||||||||||||    
T  21883399 tgatcagtgactaattgaccctgttgtaacttatatagaaagagatattctataaacaattagcaatgctgtcattttttctcattttcaacaaatggat 21883300  T
Q  508 atgagacgactttcattgtgatgtattgtatcaaacaat 546  Q
    |  |||||| ||||||||| ||| ||||||| |||||||    
T  21883299 agaagacgattttcattgtaatgcattgtattaaacaat 21883261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 478 - 600
Target Start/End: Complemental strand, 30702768 - 30702648
Alignment:
Q  478 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcatatttttaatatagtttgcaa 576  Q
    ||||||||| ||||||||| |||| ||||||  |||||| ||| || || || ||||||||||||||||| ||||||| |||||||| |||| |||||      
T  30702768 gttattttagctcattttcgacaactggatagtagacgatttttatcgtcattgtattgtatcaaacaatgttatttcttatttttagtataatttgc-- 30702671  T
Q  577 tattgtttctttgaaattttagcc 600  Q
     || ||||||||||||||||||||    
T  30702670 -atcgtttctttgaaattttagcc 30702648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 460 - 546
Target Start/End: Complemental strand, 33704205 - 33704118
Alignment:
Q  460 ttaacaataaacaatgatgttatttt-acctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaat 546  Q
    |||||||| ||||||||||| ||||| | |||||||| ||||||| ||||  |||| | ||| ||||| |||||||||||||||||||    
T  33704205 ttaacaattaacaatgatgtcatttttagctcatttttaacaaatagatagaagacaatttttattgtaatgtattgtatcaaacaat 33704118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 400 - 526
Target Start/End: Complemental strand, 18817062 - 18816936
Alignment:
Q  400 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 499  Q
    |||||||||||||| |   ||||||| ||  ||||||||| ||| |||| | ||| | |||| ||||| | || |||||||||| || ||||||||||||    
T  18817062 aaaatgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaac 18816963  T
Q  500 aaatggatatgagacgactttcattgt 526  Q
    ||||||||   |||||| |||||||||    
T  18816962 aaatggatgacagacgattttcattgt 18816936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 631
Target Start/End: Complemental strand, 33704087 - 33704022
Alignment:
Q  566 atagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccct 631  Q
    |||||||| | |||| ||| |||||||||||| ||||||||||||| ||| |||||||||| ||||    
T  33704087 atagtttgtattattatttatttgaaattttacccccacatatacctaaattctggatccgtccct 33704022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 497 - 541
Target Start/End: Complemental strand, 35188102 - 35188058
Alignment:
Q  497 aacaaatggatatgagacgactttcattgtgatgtattgtatcaa 541  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||||    
T  35188102 aacaaatggataagagacgattttcattgtaatgtattgtatcaa 35188058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 507
Target Start/End: Complemental strand, 24901831 - 24901724
Alignment:
Q  400 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 499  Q
    |||||||||||||| |   ||||||| ||  ||||||||| ||| |||| | ||| | |||| ||||| | || |||||||||| || ||||||||||||    
T  24901831 aaaatgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaac 24901732  T
Q  500 aaatggat 507  Q
    ||||||||    
T  24901731 aaatggat 24901724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 419 - 627
Target Start/End: Original strand, 461302 - 461511
Alignment:
Q  419 taaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgact 518  Q
    |||| |||||| |||||||||||||| ||| ||||| | |||||||||| | ||||||||| |||||| |||||||||||||||| |||| ||||||| |    
T  461302 taaacgaccgttttgtaacttatatataaagatatgttattttaacaattagcaatgatgtcattttagctcattttcaacaaatagataggagacgatt 461401  T
Q  519 ttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaa-attttagccccacatataccaaaagt 617  Q
    |||||||| |||||||||| |||||||| ||| ||| |||||||||||||||||||| |||| ||||||| ||  ||||| ||||| |||||| ||| ||    
T  461402 ttcattgtaatgtattgtaccaaacaatgttacttcttatttttaatatagtttgcattattatttctttaaattttttaaccccatatatactaaatgt 461501  T
Q  618 ctggatccgc 627  Q
    || |||||||    
T  461502 ctagatccgc 461511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 418 - 632
Target Start/End: Original strand, 817 - 1027
Alignment:
Q  418 ctaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgac 517  Q
    |||||||||| | |||||||||||||||||| ||||| | |||| ||||| | ||||||||||| |||| ||||||||||||||  | |||  ||||||     
T  817 ctaaatgaccatcttgtaacttatatagaaagatatgttcttttgacaattagcaatgatgttagtttagctcattttcaacaatcgaatagtagacgat 916  T
Q  518 tttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagt 617  Q
    |||||||||     |||||||   ||||| ||||||| |||||||| |||||||| |   ||||||||||||||||||||| | ||| |||| ||||  |    
T  917 tttcattgt----aattgtattgcacaatgttatttcttatttttagtatagttttcgtcattgtttctttgaaattttagtcacacgtatatcaaatat 1012  T
Q  618 ctggatccgcccctg 632  Q
    || |||||| |||||    
T  1013 ctagatccgtccctg 1027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 421 - 597
Target Start/End: Complemental strand, 9800 - 9625
Alignment:
Q  421 aatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgacttt 520  Q
    |||||| || ||||||||||||||| ||   ||| |  ||||||||| ||||||| ||||| |||| |||  |||||||||||  |||| |||| | |||    
T  9800 aatgactgtcttgtaacttatataggaagggatgttaatttaacaattaacaatgttgttactttaactc--tttcaacaaatcaatataagacaatttt 9703  T
Q  521 cattgtgat-gtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaatttta 597  Q
     ||||| || | | || |||||||| | |||||| ||||||||||||| ||||||| |||| ||||||||||||||||    
T  9702 tattgtaattgcactgcatcaaacattgttattttatatttttaatattgtttgcattattttttctttgaaatttta 9625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University