View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18363_low_13 (Length: 276)
Name: NF18363_low_13
Description: NF18363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18363_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 51804372 - 51804125
Alignment:
| Q |
12 |
aagaatataatgggacatggagggtcagggacagtgtacaaaatcgagctgaaaaccggagatgttgtggcggttaagaggctttggagtcgaagttcga |
111 |
Q |
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| T |
51804372 |
aagaatataatgggacatggagggtcagggacagtgtacaaaatcgagctgaaaaccggagatgttgtggcggttaagaggctttggagtcgaagttcga |
51804273 |
T |
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| Q |
112 |
aggattcttcgccagaagatgcattatttgtggacaaggcattgaaagctgaggtggaaacacttggaagcataagacacaagaacattgttaagttgta |
211 |
Q |
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| T |
51804272 |
aggattcttcgccagaagatgcattatttgtggacaaggcattgaaagctgaggtggaaacacttggaagcataagacacaagaacattgttaagttgta |
51804173 |
T |
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| Q |
212 |
ttgttgcttctcaagtttggattgtagcttgttggtttatgagtatat |
259 |
Q |
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| T |
51804172 |
ttgttgcttctcaagtttggattgtagcttgttggtttatgagtatat |
51804125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 249
Target Start/End: Complemental strand, 36578764 - 36578636
Alignment:
| Q |
125 |
agaagatgcattatttgtggacaaggcattgaaagctgaggtggaaacacttgg-aagcataagacacaagaacattgttaagttgta---ttgttgctt |
220 |
Q |
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| T |
36578764 |
agaagataaattatttgcggacaaggcgttgagggcagaggtagagacacttgggaagtataaaacacaagaacatgtttatcttattctgttgttgctt |
36578665 |
T |
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| Q |
221 |
ctcaagtttggattgtagcttgttggttt |
249 |
Q |
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| T |
36578664 |
ctcaattttggattgtagcttgttggttt |
36578636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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