View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18363_low_2 (Length: 653)

Name: NF18363_low_2
Description: NF18363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18363_low_2
NF18363_low_2
[»] chr5 (5 HSPs)
chr5 (1-564)||(34359709-34360271)
chr5 (1-547)||(34352001-34352546)
chr5 (226-651)||(41718388-41718812)
chr5 (226-564)||(41723114-41723451)
chr5 (225-564)||(29585302-29585641)
[»] chr3 (12 HSPs)
chr3 (227-651)||(5823190-5823613)
chr3 (224-564)||(5818515-5818854)
chr3 (226-651)||(2817178-2817590)
chr3 (269-564)||(54545902-54546198)
chr3 (413-564)||(24659138-24659287)
chr3 (452-558)||(4579254-4579360)
chr3 (380-552)||(31204781-31204950)
chr3 (275-413)||(24671173-24671301)
chr3 (371-528)||(35977103-35977258)
chr3 (275-400)||(4579126-4579241)
chr3 (522-578)||(25877086-25877142)
chr3 (380-552)||(36420054-36420220)
[»] chr4 (14 HSPs)
chr4 (228-651)||(42265883-42266305)
chr4 (226-651)||(48701736-48702160)
chr4 (269-651)||(30950098-30950481)
chr4 (228-564)||(42270602-42270937)
chr4 (227-560)||(24520031-24520363)
chr4 (226-564)||(48697133-48697471)
chr4 (269-564)||(30945479-30945775)
chr4 (275-564)||(10427315-10427595)
chr4 (358-553)||(48782850-48783031)
chr4 (314-442)||(1979253-1979375)
chr4 (415-513)||(17248015-17248112)
chr4 (454-500)||(1979559-1979604)
chr4 (391-555)||(30165804-30165968)
chr4 (487-564)||(36615361-36615438)
[»] chr8 (3 HSPs)
chr8 (227-651)||(9444007-9444430)
chr8 (227-564)||(9439374-9439710)
chr8 (493-549)||(4799315-4799371)
[»] chr6 (10 HSPs)
chr6 (269-651)||(27878624-27879008)
chr6 (224-564)||(26976133-26976472)
chr6 (228-564)||(27873992-27874327)
chr6 (227-564)||(1234680-1235016)
chr6 (275-564)||(18967912-18968192)
chr6 (291-564)||(30986552-30986827)
chr6 (278-520)||(30966683-30966923)
chr6 (515-651)||(30967674-30967810)
chr6 (375-561)||(21966677-21966860)
chr6 (398-651)||(23012415-23012667)
[»] chr2 (17 HSPs)
chr2 (226-557)||(5198664-5198994)
chr2 (403-651)||(825632-825881)
chr2 (277-644)||(15602905-15603272)
chr2 (403-564)||(830288-830450)
chr2 (299-559)||(28715816-28716070)
chr2 (275-568)||(30396909-30397191)
chr2 (1-78)||(17455239-17455316)
chr2 (94-208)||(825376-825491)
chr2 (94-208)||(830032-830147)
chr2 (346-644)||(13843719-13844014)
chr2 (269-353)||(830205-830291)
chr2 (269-353)||(825549-825635)
chr2 (406-553)||(31592923-31593068)
chr2 (344-456)||(8004167-8004278)
chr2 (344-561)||(13840245-13840456)
chr2 (431-546)||(12175768-12175881)
chr2 (502-551)||(9358158-9358207)
[»] chr7 (7 HSPs)
chr7 (275-561)||(16183636-16183913)
chr7 (269-561)||(30235038-30235334)
chr7 (344-590)||(8139940-8140183)
chr7 (380-646)||(8138384-8138645)
chr7 (566-651)||(25441076-25441161)
chr7 (408-553)||(5102606-5102749)
chr7 (462-561)||(36528420-36528518)
[»] scaffold0074 (1 HSPs)
scaffold0074 (275-564)||(27228-27508)
[»] chr1 (4 HSPs)
chr1 (275-564)||(46191266-46191544)
chr1 (380-564)||(4130215-4130399)
chr1 (380-561)||(30697120-30697300)
chr1 (344-424)||(30674787-30674865)


Alignment Details
Target: chr5 (Bit Score: 512; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Original strand, 34359709 - 34360271
Alignment:
Q  1 atgcaatatgaagtagaaacgtggaaagcaagcctgtgcaagtaatacatggtggcttgttattcaattgttcacacatgttcatattgtgtacatgttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  34359709 atgcaatatgaagtagaaacgtggaaagcaagcctgtgcaagtaatacatggtggcttgttattcaattgttcacacatgttcatatgctgtacatgttg 34359808  T
Q  101 aaattatatgcatggcagtaaataattttgacaatttgtccaattgtttacggtgccataaattagagtggttgaggcaatggctttgcaatcctataaa 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  34359809 aaattgtatgcatggcagtaaataattttgacaatttgtccaattgtttacagtgccataaattggagtggttgaggcaatggctttgcaatcctataaa 34359908  T
Q  201 cagcttgcccgtgaatcatttccaatcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaa 300  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34359909 tagcttgcccgtgaatcatttccaatcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagagaaa 34360007  T
Q  301 aattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagaga 400  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34360008 aattagtttctcctgtgagatttctcctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagaga 34360107  T
Q  401 ggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgtt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  34360108 ggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttctacgtaaaatattgtgtgtt 34360207  T
Q  501 cagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaa 564  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34360208 cagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaa 34360271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Original strand, 34352001 - 34352546
Alignment:
Q  1 atgcaatatgaagtagaaacgtggaaagcaagcctgtgcaagtaatacatggtggcttgttattcaattgttcacacatgttcatattgtgtacatgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||    
T  34352001 atgcaatatgaagtagaaacgtggaaagcaagcctgtgcaagtaatacatggtggcttgttattcaattgttcgcacatgttcatatgttgtacatgttg 34352100  T
Q  101 aaattatatgcatggcagtaaataattttgacaatttgtccaattgtttacggtgccataaattagagtggttgaggcaatggctttgcaatcctataaa 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34352101 aaattgtatgcatggcagtaaataattttgacaatttgtccaattgtttacggtgccataaattggagtggttgaggcaatggctttgcaatcctataaa 34352200  T
Q  201 cagcttgcccgtgaatcatttccaatcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaa 300  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34352201 tagcttgcccgtgaatcatttccaatcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagagaaa 34352299  T
Q  301 aattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagaga 400  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34352300 aattagtttctcctgtgagatttctcctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagaga 34352399  T
Q  401 ggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgtt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34352400 ggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgtt 34352499  T
Q  501 cagttcctcttttctcgtctcttattttagctgcgtgataatatttt 547  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  34352500 cagttcctcttttctcgtctcttattttagctgcgtgataatatttt 34352546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 226 - 651
Target Start/End: Original strand, 41718388 - 41718812
Alignment:
Q  226 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttct 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  41718388 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttct 41718486  T
Q  326 cctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagt 425  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41718487 cctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagt 41718586  T
Q  426 gaaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttat 525  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718587 gaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttat 41718686  T
Q  526 tttagctgcgtgataatattttgttactctggtacctaatagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtgg 625  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  41718687 tttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtgg 41718786  T
Q  626 taagaaaaatcttagtatgctctgtg 651  Q
    ||||||||||||||||||||||||||    
T  41718787 taagaaaaatcttagtatgctctgtg 41718812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 226 - 564
Target Start/End: Original strand, 41723114 - 41723451
Alignment:
Q  226 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttct 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  41723114 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttct 41723212  T
Q  326 cctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagt 425  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41723213 cctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagt 41723312  T
Q  426 gaaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttat 525  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723313 gaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttat 41723412  T
Q  526 tttagctgcgtgataatattttgttactctggtacctaa 564  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41723413 tttagctgcgtgataatattttgttactctggtacctaa 41723451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 225 - 564
Target Start/End: Complemental strand, 29585641 - 29585302
Alignment:
Q  225 atcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttc 324  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29585641 atcatcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttc 29585542  T
Q  325 tcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttag 424  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  29585541 tcctagtttgtattagttagtattctcctatttataagagagagtggtaattgtactctctttgtagttagagagaggtcctgtaatttcttccacttag 29585442  T
Q  425 tgaaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctctta 524  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585441 tgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctctta 29585342  T
Q  525 ttttagctgcgtgataatattttgttactctggtacctaa 564  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  29585341 ttttagctgcatgataatattttgttactctgatacctaa 29585302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 227 - 651
Target Start/End: Complemental strand, 5823613 - 5823190
Alignment:
Q  227 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  5823613 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 5823515  T
Q  327 ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtg 426  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5823514 ctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtg 5823415  T
Q  427 aaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 526  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823414 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 5823315  T
Q  527 ttagctgcgtgataatattttgttactctggtacctaatagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggt 626  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  5823314 ttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtggt 5823215  T
Q  627 aagaaaaatcttagtatgctctgtg 651  Q
    |||||||||||||||||||||||||    
T  5823214 aagaaaaatcttagtatgctctgtg 5823190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 224 - 564
Target Start/End: Complemental strand, 5818854 - 5818515
Alignment:
Q  224 aatcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggttt 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  5818854 aatcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggttt 5818756  T
Q  324 ctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccactta 423  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5818755 ctcctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccactta 5818656  T
Q  424 gtgaaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctctt 523  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5818655 gtgaaagttctctactcttgccccgtggttttttccccttattagttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctctt 5818556  T
Q  524 attttagctgcgtgataatattttgttactctggtacctaa 564  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  5818555 attttagttgcgtgataatattttgttactctggtacctaa 5818515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 226 - 651
Target Start/End: Complemental strand, 2817590 - 2817178
Alignment:
Q  226 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttct 325  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| |||| |||||||||||               
T  2817590 tcatcccaaatcagtaacaacacaagaacaagtaaaacttgtttagggtaatgagagaaaaaatatagagaggaaaaatagtttctcct----------- 2817502  T
Q  326 cctagtttgtgttagtttgtattctcctatttataagagagag--tggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccactta 423  Q
       ||||||| |||||| |||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| || ||||||||||||||||||    
T  2817501 ---agtttgtattagttagtattctcctatttataagagagagagtggtgattgtactctccttgtatttagagagagttcttgtaatttcttccactta 2817405  T
Q  424 gtgaaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctctt 523  Q
    |||| |||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2817404 gtgagagttctttactcttgccctgtggttttttccctt-atttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctctt 2817306  T
Q  524 attttagctgcgtgataatattttgttactctggtacctaatagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagt 623  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  |||||||||| ||||||||||| || |||||||||||| ||    
T  2817305 attttagctgcgtgataatattttgttactctggtacctaacagtggtatcaaagccgctggttcgtagttgttattccgcagtaataaactagtggtgt 2817206  T
Q  624 ggtaagaaaaatcttagtatgctctgtg 651  Q
    ||||||||||||||||||||||| ||||    
T  2817205 ggtaagaaaaatcttagtatgctatgtg 2817178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 269 - 564
Target Start/End: Original strand, 54545902 - 54546198
Alignment:
Q  269 tagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagag 366  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||  |||||||||||||||||||||||||    
T  54545902 tagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagag 54546001  T
Q  367 agtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatt 466  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  54546002 agtggtaattgtactctccttgtagttagagagaggtcctgtaatttcatccacttagtgaaagttctctactctagccccgtggttttttccccttatt 54546101  T
Q  467 tgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaa 564  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  54546102 tgttgaggggtttccacgt-aaatattgtatgttcagttcctcttttctcatctcttattttagctgcgtgataatattttgttactctggtacctaa 54546198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 413 - 564
Target Start/End: Complemental strand, 24659287 - 24659138
Alignment:
Q  413 tcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttt 512  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24659287 tcttccacttagtgaaagttct--actcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatgttgtgtgttcagttcctcttt 24659190  T
Q  513 tctcgtctcttattttagctgcgtgataatattttgttactctggtacctaa 564  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||||||||||    
T  24659189 tctcatctcttattttagctgtgtgataatattttattactctggtacctaa 24659138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 452 - 558
Target Start/End: Original strand, 4579254 - 4579360
Alignment:
Q  452 ttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtta 551  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4579254 ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattttgtta 4579353  T
Q  552 ctctggt 558  Q
    |||||||    
T  4579354 ctctggt 4579360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 380 - 552
Target Start/End: Complemental strand, 31204950 - 31204781
Alignment:
Q  380 ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgcc-ccgtggttttttccctttatttgttgaggggtt 478  Q
    |||||||| |||||||||||  ||  |||||||| | ||||||||||||||||||||||| ||||| ||||| ||||||||  |||||||||||||||||    
T  31204950 ctctccttatatttagagag--gttttgtaatttttcccacttagtgaaagttctctactattgcctccgtgattttttcctcttatttgttgaggggtt 31204853  T
Q  479 tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttac 552  Q
    ||||||| |||||||||| |||||||||||||||| || |||||| ||||| ||||||| ||||||||||||||    
T  31204852 tccacgt-aaatattgtgagttcagttcctctttt-tcatctcttcttttaactgcgtgctaatattttgttac 31204781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 275 - 413
Target Start/End: Complemental strand, 24671301 - 24671173
Alignment:
Q  275 agtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 374  Q
    |||||||| |||||||||||||| |||  ||||||||||||||||||||||||||||        ||| ||||||||||||||  ||||||||| |||||    
T  24671301 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattctcctattt-caagagagag-ggtaa 24671212  T
Q  375 ttgtactctccttgtatttagagagaggtcctgtaattt 413  Q
    ||   ||||||||||||||||||||| ||| ||||||||    
T  24671211 tttgtctctccttgtatttagagagaagtcttgtaattt 24671173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 371 - 528
Target Start/End: Original strand, 35977103 - 35977258
Alignment:
Q  371 gtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttc-tctactcttgccccgtggttttttccctttatttgt 469  Q
    |||||||| ||||||||||||||||||||| ||| |||||||| |||||||||||||||  || | ||||||||||  |||  ||||||||  ||| |||    
T  35977103 gtaattgttctctccttgtatttagagagaagtcttgtaattttttccacttagtgaaaactcttttactcttgccaagtgagtttttccc--tatatgt 35977200  T
Q  470 tgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatttt 528  Q
    ||| || |||  |||| ||||||||| |||||| || ||||||||||  ||||||||||    
T  35977201 tgatggttttttacgt-aaatattgtttgttcaatttctcttttctcacctcttatttt 35977258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 400
Target Start/End: Original strand, 4579126 - 4579241
Alignment:
Q  275 agtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 374  Q
    |||||||| |||||||||||||| |||  ||||||||||||||||||||||| |||        |||| ||||||||||||||  | ||||||| |||||    
T  4579126 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcatag--------agttagtattctcctattt-cacgagagag-ggtaa 4579215  T
Q  375 ttgtactctccttgtatttagagaga 400  Q
    ||   |||||||||||||||||||||    
T  4579216 tttgtctctccttgtatttagagaga 4579241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 522 - 578
Target Start/End: Original strand, 25877086 - 25877142
Alignment:
Q  522 ttattttagctgcgtgataatattttgttactctggtacctaatagtggtatcagag 578  Q
    ||||||||| ||||| |||||||| ||||| |||||||||||| |||||||||||||    
T  25877086 ttattttagttgcgtaataatattatgttattctggtacctaacagtggtatcagag 25877142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 552
Target Start/End: Original strand, 36420054 - 36420220
Alignment:
Q  380 ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgaggggttt 479  Q
    ||||| |||||||||||||    || |||||||||| | ||||||  || ||| |||||| ||||||||| || |||| | | ||||||||||  | |||    
T  36420054 ctctcattgtatttagaga----tcttgtaatttctccaacttagcaaatgttttctacttttgccccgtagtctttttc-tgtatttgttgaaagattt 36420148  T
Q  480 ccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttac 552  Q
    ||||||||| |||| |||||   |||| | ||||||| |||| ||||||| || | |||||||||||||||||    
T  36420149 ccacgtaaa-tattatgtgtgttgttctttttttctcatctcatattttaactacatgataatattttgttac 36420220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 228 - 651
Target Start/End: Original strand, 42265883 - 42266305
Alignment:
Q  228 atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcc 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||||||||||||    
T  42265883 atcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcc 42265981  T
Q  328 tagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtga 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42265982 tagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtga 42266081  T
Q  428 aagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattt 527  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266082 aagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattt 42266181  T
Q  528 tagctgcgtgataatattttgttactctggtacctaatagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggta 627  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  42266182 tagctgcgtgataatattttgttactctggtatctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtggta 42266281  T
Q  628 agaaaaatcttagtatgctctgtg 651  Q
    ||||||||||||||||||||||||    
T  42266282 agaaaaatcttagtatgctctgtg 42266305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 226 - 651
Target Start/End: Complemental strand, 48702160 - 48701736
Alignment:
Q  226 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttct 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  48702160 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttct 48702062  T
Q  326 cctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagt 425  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48702061 cctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagt 48701962  T
Q  426 gaaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttat 525  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701961 gaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttat 48701862  T
Q  526 tttagctgcgtgataatattttgttactctggtacctaatagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtgg 625  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  48701861 tttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtgg 48701762  T
Q  626 taagaaaaatcttagtatgctctgtg 651  Q
    ||||||||||||||||||||||||||    
T  48701761 taagaaaaatcttagtatgctctgtg 48701736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 269 - 651
Target Start/End: Complemental strand, 30950481 - 30950098
Alignment:
Q  269 tagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagag 366  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||  |||||||||||||||||||||||||    
T  30950481 tagaatagagagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagag 30950382  T
Q  367 agtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatt 466  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30950381 agtggtaattgtactttccttgtatttagagagaggttctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccctt-att 30950283  T
Q  467 tgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaata 566  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |    
T  30950282 tgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttatcttattttagctgcgtgataatattttgttactctggtacctaaca 30950183  T
Q  567 gtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 651  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30950182 gtggtatcagagctcctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 30950098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 228 - 564
Target Start/End: Original strand, 42270602 - 42270937
Alignment:
Q  228 atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcc 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||||||||||||    
T  42270602 atcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcc 42270700  T
Q  328 tagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtga 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270701 tagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtga 42270800  T
Q  428 aagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattt 527  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270801 aagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattt 42270900  T
Q  528 tagctgcgtgataatattttgttactctggtacctaa 564  Q
    |||||||||||||||||||||||||||||||| ||||    
T  42270901 tagctgcgtgataatattttgttactctggtatctaa 42270937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 227 - 560
Target Start/End: Complemental strand, 24520363 - 24520031
Alignment:
Q  227 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  24520363 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 24520265  T
Q  327 ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtg 426  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24520264 ctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtg 24520165  T
Q  427 aaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 526  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520164 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 24520065  T
Q  527 ttagctgcgtgataatattttgttactctggtac 560  Q
    |||| |||||||||||||||||||||||||||||    
T  24520064 ttagttgcgtgataatattttgttactctggtac 24520031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 226 - 564
Target Start/End: Complemental strand, 48697471 - 48697133
Alignment:
Q  226 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttct 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  48697471 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttct 48697373  T
Q  326 cctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagt 425  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48697372 cctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagt 48697273  T
Q  426 gaaagttctctactcttgccccgtggtt-ttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctctta 524  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  48697272 gaaagttctctactcttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctctta 48697173  T
Q  525 ttttagctgcgtgataatattttgttactctggtacctaa 564  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48697172 ttttagctgcgtgataatattttgttactctggtacctaa 48697133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 269 - 564
Target Start/End: Complemental strand, 30945775 - 30945479
Alignment:
Q  269 tagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagag 366  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||  |||||||||||||||||||||||||    
T  30945775 tagaatagagagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagag 30945676  T
Q  367 agtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatt 466  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  30945675 agtggtaattgtactctccttgtatttagagagaggttctgtaatttcttccacttagtgaaagttctctactcttgccccgtgattttttccc-ttatt 30945577  T
Q  467 tgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaa 564  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  30945576 tgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttagctgcgtgataatattttgttactctgatacctaa 30945479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 275 - 564
Target Start/End: Original strand, 10427315 - 10427595
Alignment:
Q  275 agtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 374  Q
    |||||||| |||||||||||||| |||  ||||||||||||||||||||||||||||        ||| ||||||||||||||  ||||||||| |||||    
T  10427315 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattctcctatttc-aagagagag-ggtaa 10427404  T
Q  375 ttgtactctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgag 473  Q
    ||   ||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||| || |||||| |||||||||| ||||||||||||    
T  10427405 tttgtctctccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttatctactttttccccgtagttttttccccttatttgttgag 10427504  T
Q  474 gggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaa 564  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  10427505 gggtttccgcgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattctgttactctggtacctaa 10427595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 358 - 553
Target Start/End: Original strand, 48782850 - 48783031
Alignment:
Q  358 ataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttt 457  Q
    |||||||||||||||||||||||||  | |||||||||||||||||| | ||||||||||||||||||||||||||||         ||| ||  |||||    
T  48782850 ataagagagagtggtaattgtactc--catgtatttagagagaggtcatctaatttcttccacttagtgaaagttctc---------cccatg--ttttt 48782936  T
Q  458 ccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttact 553  Q
    ||||||||||||||||   |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||   |||||||||||||||| ||||    
T  48782937 ccctttatttgttgagaaatttccacgtaaa-tattgtgtgttcagttcctgttttctcgtttcttattttaatcgcgtgataatattttgatact 48783031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 314 - 442
Target Start/End: Original strand, 1979253 - 1979375
Alignment:
Q  314 tgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaattt 413  Q
    ||||||||||||||| ||| ||| ||||    |||||||| |||||||||||||||||||| | ||| ||||||| ||||  ||||||||| ||||||||    
T  1979253 tgtgaggtttctcctggttagtgctagt----attctcctgtttataagagagagtggtaaatataccctccttgcattt--agagaggtcgtgtaattt 1979346  T
Q  414 cttccacttagtgaaagttctctactctt 442  Q
    ||||| |||| |||||||| |||||||||    
T  1979347 cttcctcttactgaaagttatctactctt 1979375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 415 - 513
Target Start/End: Original strand, 17248015 - 17248112
Alignment:
Q  415 ttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttt 513  Q
    ||||||||| |||||||||| |||||||  || ||||||||||||| |||||| || |||| |||||| || ||||||||||| || |||| |||||||    
T  17248015 ttccacttaatgaaagttctatactcttatccggtggttttttccccttatttattaagggatttccatgt-aaatattgtgtatttagtttctctttt 17248112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 500
Target Start/End: Original strand, 1979559 - 1979604
Alignment:
Q  454 ttttccctttatttgttgaggggtttccacgtaaaatattgtgtgtt 500  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  1979559 ttttctctttatttgttgaggggtttccacgt-aaatattgtgtgtt 1979604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 391 - 555
Target Start/End: Original strand, 30165804 - 30165968
Alignment:
Q  391 tttagagagaggtcctgtaatttcttccacttagtgaaagttct-ctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaa 489  Q
    ||||||||||||   |||||||| || ||||| |||||| |||| ||||| | ||| | ||| | || || |||||||| | |||  ||| ||||||||     
T  30165804 tttagagagagggtttgtaattttttacacttggtgaaaattcttctactatcgccacatggatattcccttttatttgataaggaattttcacgtaaa- 30165902  T
Q  490 tattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactct 555  Q
    |||| |||||||| ||| | ||||||| | ||||||||||| || |||||| ||||||||||||||    
T  30165903 tattatgtgttcaattcattttttctcatatcttattttagttgtgtgatattattttgttactct 30165968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 487 - 564
Target Start/End: Complemental strand, 36615438 - 36615361
Alignment:
Q  487 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaa 564  Q
    ||||| ||| ||||| ||| |||||||||| | |||||||||| ||| | ||||||||||| ||||||| ||||||||    
T  36615438 aaataatgtatgttcggtttctcttttctcatatcttattttaactgtgcgataatattttattactctagtacctaa 36615361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 227 - 651
Target Start/End: Complemental strand, 9444430 - 9444007
Alignment:
Q  227 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  9444430 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 9444332  T
Q  327 ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtg 426  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9444331 ctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtg 9444232  T
Q  427 aaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 526  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444231 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 9444132  T
Q  527 ttagctgcgtgataatattttgttactctggtacctaatagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggt 626  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  9444131 ttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtggt 9444032  T
Q  627 aagaaaaatcttagtatgctctgtg 651  Q
    |||||||||||||||||||||||||    
T  9444031 aagaaaaatcttagtatgctctgtg 9444007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 227 - 564
Target Start/End: Complemental strand, 9439710 - 9439374
Alignment:
Q  227 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  9439710 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 9439612  T
Q  327 ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtg 426  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9439611 ctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtg 9439512  T
Q  427 aaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 526  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439511 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 9439412  T
Q  527 ttagctgcgtgataatattttgttactctggtacctaa 564  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9439411 ttagctgcgtgataatattttgttactctggtacctaa 9439374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 493 - 549
Target Start/End: Original strand, 4799315 - 4799371
Alignment:
Q  493 tgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgt 549  Q
    |||||||||| || |||||||||| |||||||||||||| | |||||||||||||||    
T  4799315 tgtgtgttcaatttctcttttctcatctcttattttagcagtgtgataatattttgt 4799371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 269 - 651
Target Start/End: Complemental strand, 27879008 - 27878624
Alignment:
Q  269 tagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagag 366  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||  |||||||||||||||||||||||||    
T  27879008 tagaatagagagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagag 27878909  T
Q  367 agtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatt 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27878908 agtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatt 27878809  T
Q  467 tgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaata 566  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27878808 tgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 27878709  T
Q  567 gtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 651  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878708 gtggtatcagagcccctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 27878624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 224 - 564
Target Start/End: Complemental strand, 26976472 - 26976133
Alignment:
Q  224 aatcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggttt 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  26976472 aatcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggttt 26976374  T
Q  324 ctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccactta 423  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26976373 ctcctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccactta 26976274  T
Q  424 gtgaaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctctt 523  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976273 gtgaaagttctctactcttgccccttggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctctt 26976174  T
Q  524 attttagctgcgtgataatattttgttactctggtacctaa 564  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26976173 attttagctgcgtgataatattttgttactctggtacctaa 26976133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 228 - 564
Target Start/End: Complemental strand, 27874327 - 27873992
Alignment:
Q  228 atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcc 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||||||||||||    
T  27874327 atcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcc 27874229  T
Q  328 tagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtga 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27874228 tagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtga 27874129  T
Q  428 aagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattt 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27874128 aagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattt 27874029  T
Q  528 tagctgcgtgataatattttgttactctggtacctaa 564  Q
    ||| |||||||||||||||||||||||||||||||||    
T  27874028 tagatgcgtgataatattttgttactctggtacctaa 27873992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 227 - 564
Target Start/End: Original strand, 1234680 - 1235016
Alignment:
Q  227 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  1234680 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 1234778  T
Q  327 ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtg 426  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1234779 ctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtg 1234878  T
Q  427 aaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 526  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1234879 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 1234978  T
Q  527 ttagctgcgtgataatattttgttactctggtacctaa 564  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1234979 ttagctgcgtgataatattttgttactctggtacctaa 1235016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 275 - 564
Target Start/End: Original strand, 18967912 - 18968192
Alignment:
Q  275 agtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 374  Q
    |||||||| ||||||||| |||| |||  ||||||||| ||||||||||||||||||        ||| ||||||||||||||  | ||||||| | |||    
T  18967912 agtgagaggaaaaatataaagaggaaatatagtttctcttgtgaggtttctcctagt--------gttagtattctcctatttc-atgagagag-gctaa 18968001  T
Q  375 ttgtactctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgag 473  Q
    ||   ||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  18968002 tttgtctctccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttttctactcttgccccgtggttttttccccttatttgttgag 18968101  T
Q  474 gggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaa 564  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18968102 gggtttccacgtaaaatattatgtattcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaa 18968192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 291 - 564
Target Start/End: Original strand, 30986552 - 30986827
Alignment:
Q  291 tagagagaaa-aattagtttctcctg-tgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttg 388  Q
    |||||||||| || |||||||||||  ||||||||||||||| | |||| |||    ||||| ||||||| |||||||||||||||||||||||||||||    
T  30986552 tagagagaaagaaatagtttctcctcatgaggtttctcctaggtagtgtcagt----attcttctatttacaagagagagtggtaattgtactctccttg 30986647  T
Q  389 tatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccct--ttatttgttgaggggt---ttccac 483  Q
     |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||   |  ||||||||||||||||   ||||||    
T  30986648 catttagagagaggtcctgcaatttcttccacttagtgaaagttctctactcttgccccgtggttttttttttccttatttgttgaggggtactttccac 30986747  T
Q  484 gtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaa 564  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  30986748 gtaaa-tattgtgcgttcagttcctcttttctcgtctcttattttagctacgtgataatattttgttactctgatacctaa 30986827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 278 - 520
Target Start/End: Original strand, 30966683 - 30966923
Alignment:
Q  278 gagagaaaaaatatagagagaaa-aattagtttctcct-gtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaat 375  Q
    ||||||||||||||||||||||| || |||||||| || |||||||||||||||| | |  | |||    ||||| ||||||| ||||||||||||||||    
T  30966683 gagagaaaaaatatagagagaaagaaatagtttctacttgtgaggtttctcctaggtagcctcagt----attcttctatttacaagagagagtggtaat 30966778  T
Q  376 tgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttt-ttccctttatttgttgagg 474  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| || || ||||||||||| |    
T  30966779 tgtactctccttgcatttagagagaggttctgcaatttcttccacttagtgaaagttctctactcttgccccgtgattttatttcccttatttgttgatg 30966878  T
Q  475 ggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 520  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  30966879 ggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtct 30966923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 515 - 651
Target Start/End: Original strand, 30967674 - 30967810
Alignment:
Q  515 tcgtctcttattttagctgcgtgataatattttgttactctggtacctaatagtggtatcagagcccttggttcgtagctgttattccgctgtgataaac 614  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||| |||||||    
T  30967674 tcgtctcttattttagctgcttgataatattttgttactctggtacctaacagtggtatcagagcctttagttcgtagctgttattccgctgcgataaac 30967773  T
Q  615 tagtggagtggtaagaaaaatcttagtatgctctgtg 651  Q
    |||||| ||||||||||||||||||||||||||||||    
T  30967774 tagtggtgtggtaagaaaaatcttagtatgctctgtg 30967810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 375 - 561
Target Start/End: Original strand, 21966677 - 21966860
Alignment:
Q  375 ttgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgagg 474  Q
    |||||||||| ||| | ||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| | | ||||||||||||||| ||||||    
T  21966677 ttgtactctctttgaaattagagagaggtcttataatttcttccatttagtgaaagttctctactcttgccccat-gatttttccctttatttattgagg 21966775  T
Q  475 ggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc 561  Q
    ||||||||| | ||||||| | |||| ||||||||||||||| | | ||| ||||||||||||||||| ||| |||||| |||||||    
T  21966776 ggtttccacat-aaatattttatgtttagttcctcttttctcatatgtta-tttagctgcgtgataatgtttcgttactttggtacc 21966860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 398 - 651
Target Start/End: Complemental strand, 23012667 - 23012415
Alignment:
Q  398 agaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgt 497  Q
    ||||||| || |||||||  |||||||||||||||||||||||||||||  |||||||| ||||| |||||| || | ||||||||||||| || |||||    
T  23012667 agaggtcttgaaatttctctcacttagtgaaagttctctactcttgccca-tggtttttccccttaatttgt-gacgagtttccacgtaaa-taatgtgt 23012571  T
Q  498 gttcagttcctctttt-ctcgtctcttattttagctgcgtgataata-ttttgttactctggtacctaatagtggtatcagagcccttggttcgtagctg 595  Q
    ||||| ||| |||||| ||||||||||||||||| |||||||||||| |||| ||||| || |||| || | ||  ||  ||||| |||| |||||| ||    
T  23012570 gttcaattcttctttttctcgtctcttattttagttgcgtgataatattttttttactttgttacccaacaatgtcatttgagccattggctcgtagttg 23012471  T
Q  596 ttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 651  Q
    || |||| |    | |||| |||| |||||||||||||| ||||||||||| ||||    
T  23012470 ttgttccacatcaacaaacaagtgcagtggtaagaaaaaacttagtatgctttgtg 23012415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 226 - 557
Target Start/End: Complemental strand, 5198994 - 5198664
Alignment:
Q  226 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttct 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  5198994 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttct 5198896  T
Q  326 cctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagt 425  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5198895 cctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagt 5198796  T
Q  426 gaaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttat 525  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198795 gaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttat 5198696  T
Q  526 tttagctgcgtgataatattttgttactctgg 557  Q
    ||||||||||||||||||||||||||||||||    
T  5198695 tttagctgcgtgataatattttgttactctgg 5198664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 403 - 651
Target Start/End: Original strand, 825632 - 825881
Alignment:
Q  403 tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttt-ccctttatttgttgaggggtttccacgtaaaatattgtgtgttc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  825632 tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttttccccttatttgttgagtggtttccacgtaaaatattgtgtgttc 825731  T
Q  502 agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaatagtggtatcagagcccttggttcgtagctgttattc 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||    
T  825732 agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattc 825831  T
Q  602 cgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 651  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  825832 cgctgtgataaactagtgaagtggtaagaaaaatcttagtatgctctgtg 825881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 277 - 644
Target Start/End: Original strand, 15602905 - 15603272
Alignment:
Q  277 tgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaatt 376  Q
    |||||| ||||||||||| ||||||||||| || | || ||||||||||| ||||  ||||||||| ||||||||||||||| |||| ||| ||||||||    
T  15602905 tgagaggaaaaatatagaaagaaaaattagatttttctatgaggtttctcttagtaagtgttagttagtattctcctatttacaagatagaatggtaatt 15603004  T
Q  377 gtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgagggg 476  Q
    |||| |||| || ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15603005 gtacactccatgcatttagagagaggtcttgtaatttcttctacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgagggg 15603104  T
Q  477 tttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaatagtggtatcag 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||| |||||||   ||| || |||| ||||||    
T  15603105 tttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatttcaattgcgtgataatattttcttactctcacacccaacagtgctatcag 15603204  T
Q  577 agcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatg 644  Q
    || | ||||||||||  |||||||||| ||  | ||||| |||||||||||||||| |||||||||||    
T  15603205 agtcattggttcgtaattgttattccgatgcaaaaaactggtggagtggtaagaaatatcttagtatg 15603272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 403 - 564
Target Start/End: Original strand, 830288 - 830450
Alignment:
Q  403 tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttt-ccctttatttgttgaggggtttccacgtaaaatattgtgtgttc 501  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  830288 tcctgtaatttcttccacttagtgaaagttctccactcttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc 830387  T
Q  502 agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaa 564  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  830388 agttcctcttttctcgtctcttattttaactgcgtgataatattttgttactctggtacctaa 830450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 299 - 559
Target Start/End: Original strand, 28715816 - 28716070
Alignment:
Q  299 aaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagaga 398  Q
    |||| ||||||||| ||| ||||||||||||| | ||||||||    ||||||||||||||| || |  ||||||||||||||||||||| |||||||||    
T  28715816 aaaaatagtttctcttgtaaggtttctcctaggtagtgttagt----attctcctatttataggaaacggtggtaattgtactctccttgcatttagaga 28715911  T
Q  399 gaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtg 498  Q
    || ||||||||||||||||||||| |||||||||||||| ||||  |  |||| |||||||| ||||||  |||||||||||||||| ||||||||||||    
T  28715912 gatgtcctgtaatttcttccactttgtgaaagttctctattcttctcttgtgg-tttttccccttatttaatgaggggtttccacgt-aaatattgtgtg 28716009  T
Q  499 ttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggta 559  Q
    |||| |||||||||| |||||||||||||||  || |||||||||||||||||||||||||    
T  28716010 ttcaattcctcttttgtcgtctcttattttaaatgtgtgataatattttgttactctggta 28716070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 275 - 568
Target Start/End: Complemental strand, 30397191 - 30396909
Alignment:
Q  275 agtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 374  Q
    |||||||| || ||||||||||| |||  |||||||||||||||| |||||||||||        |||  |||||||||||||  || | |||| |||||    
T  30397191 agtgagaggaacaatatagagaggaaatatagtttctcctgtgagatttctcctagt--------gttaatattctcctatttc-aacatagag-ggtaa 30397102  T
Q  375 ttgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaa-gttctctactcttgccccgtggttttttccctttatttgttgag 473  Q
    ||   |||||||||||| |||| ||||||| |||||||||||||||||||||||| |||||||||||| |||| ||| |||||| || ||||||||||||    
T  30397101 tttgtctctccttgtatatagaaagaggtcttgtaatttcttccacttagtgaaaagttctctactctcgccctgtgatttttttcccttatttgttgag 30397002  T
Q  474 gggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaatagt 568  Q
    ||||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||    
T  30397001 gggtttcaacg-aaaatat-gtgtgttcagttcgtcttttctcgtctcttattttagctgcgtgataatattttgctactctggcacccaatagt 30396909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 17455316 - 17455239
Alignment:
Q  1 atgcaatatgaagtagaaacgtggaaagcaagcctgtgcaagtaatacatggtggcttgttattcaattgttcacaca 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17455316 atgcaatatgaagtagaaacgtggaaagcaagcctgtgcaagtaatacatggtggcttgttattcaattgttcacaca 17455239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 825376 - 825491
Alignment:
Q  94 catgttgaaattatatgcatggcagtaaataattttgacaatttgtccaattgttt-acggtgccataaattagagtggttgaggcaatggctttgcaat 192  Q
    ||||||||||||  |||| ||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||| || |    
T  825376 catgttgaaattggatgcttggcagtaaatcattttgacaatttgttcaattgttttacggtgccataaattggagtggttgaggcaatggctttacact 825475  T
Q  193 cctataaacagcttgc 208  Q
    |||||||| |||||||    
T  825476 cctataaatagcttgc 825491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 830032 - 830147
Alignment:
Q  94 catgttgaaattatatgcatggcagtaaataattttgacaatttgtccaattgttt-acggtgccataaattagagtggttgaggcaatggctttgcaat 192  Q
    ||||||||||||  |||| ||||||||||| ||||| ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||| || |    
T  830032 catgttgaaattggatgcttggcagtaaatcattttaacaatttgttcaattgttttacggtgccataaattggagtggttgaggcaatggctttacact 830131  T
Q  193 cctataaacagcttgc 208  Q
    | |||||| |||||||    
T  830132 catataaatagcttgc 830147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 346 - 644
Target Start/End: Complemental strand, 13844014 - 13843719
Alignment:
Q  346 attctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgcc 445  Q
    |||||||||||| ||| | |||||||||||| || ||| |||||||||| | || ||||||||||||||||||||||| ||||| |||| |||| ||  |    
T  13844014 attctcctatttttaaaatagagtggtaattttattcttcttgtatttataaaggggtcctgtaatttcttccacttaatgaaaattctatacttttaac 13843915  T
Q  446 ccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttca-gttcctcttttctcgtctcttattttagctgcgtgataatat 544  Q
    |  |   |||||| | |||||||||||||||||||||||| ||||||  ||||||||  || || |||||||    |||| ||||  | |||||||||||    
T  13843914 ctat-aatttttctccttatttgttgaggggtttccacgt-aaatat--tgtgttcatttttcttttttctcaaaacttactttacttacgtgataatat 13843819  T
Q  545 tttgttactctggtacctaatagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatg 644  Q
    ||| |||||||| || | |  |||||||| |||||| |||| ||||    ||| |||||||||   ||||| ||||||||||||||||||| ||||||||    
T  13843818 tttattactctgatagccacaagtggtattagagccattggctcgtgatagttgttccgctgtagcaaactggtggagtggtaagaaaaatattagtatg 13843719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 269 - 353
Target Start/End: Original strand, 830205 - 830291
Alignment:
Q  269 tagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgtta--gtttgtattctcct 353  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||  ||||||||||||||    
T  830205 tagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcct 830291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 269 - 353
Target Start/End: Original strand, 825549 - 825635
Alignment:
Q  269 tagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgtta--gtttgtattctcct 353  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | ||||||  ||||||||||||||    
T  825549 tagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgcgaggtttctcctaggtagtgttagtgtttgtattctcct 825635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 406 - 553
Target Start/End: Complemental strand, 31593068 - 31592923
Alignment:
Q  406 tgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagtt 505  Q
    ||||||||||| |  ||||||||||||||||||||||   | ||||||||||  | |||||| ||||| | |||||||||||| |||||| ||||  |||    
T  31593068 tgtaatttctttcggttagtgaaagttctctactctt-atctgtggttttttttc-ttatttattgagagatttccacgtaaattattgtatgttatgtt 31592971  T
Q  506 cctcttttctcgtctcttattttagctgcgtgataatattttgttact 553  Q
    ||||||||||||||||||||| || ||| ||||||||||| |||||||    
T  31592970 cctcttttctcgtctcttattctatctgtgtgataatattatgttact 31592923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 344 - 456
Target Start/End: Original strand, 8004167 - 8004278
Alignment:
Q  344 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg 443  Q
    ||||||||||||||||||||||||||| |||||||||||| |||  ||||| ||||||||  | |||||||||||| | |||||||||| |||| || |     
T  8004167 gtattctcctatttataagagagagtg-taattgtactcttcttacatttaaagagaggttttataatttcttccattcagtgaaagttttctagtcata 8004265  T
Q  444 ccccgtggttttt 456  Q
    |||||| ||||||    
T  8004266 ccccgttgttttt 8004278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 344 - 561
Target Start/End: Complemental strand, 13840456 - 13840245
Alignment:
Q  344 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg 443  Q
    |||||||  ||||| ||||||||| | ||||||||||||||||| |||||||||||||||  |||||||| ||  |||| || ||| || ||||||||||    
T  13840456 gtattcttttatttttaagagagaattgtaattgtactctccttatatttagagagaggttttgtaattt-ttttacttggtaaaaattttctactcttg 13840358  T
Q  444 ccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataata 543  Q
    | || ||  |||| ||| || ||||||||||  ||  || || ||||||  ||||||| ||||||| |||||| ||| ||||| ||  | ||||||||||    
T  13840357 ctccatg--ttttcccccttgtttgttgaggaattctcatgt-aaatat--tgtgttcggttcctcctttctcatcttttattataattacgtgataata 13840263  T
Q  544 ttttgttactctggtacc 561  Q
    |||||||| |||||||||    
T  13840262 ttttgttattctggtacc 13840245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 431 - 546
Target Start/End: Complemental strand, 12175881 - 12175768
Alignment:
Q  431 ttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttag 530  Q
    ||||||||||||| ||  | ||||||||| || |||| |||||  ||||||||  ||||||||||||||||| || || |||| || ||| |||||||||    
T  12175881 ttctctactcttgtccaattgttttttccatt-atttattgagatgtttccaca-aaaatattgtgtgttcaatttcttttttatcatcttttattttag 12175784  T
Q  531 ctgcgtgataatattt 546  Q
     |||||||||||||||    
T  12175783 ttgcgtgataatattt 12175768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 551
Target Start/End: Complemental strand, 9358207 - 9358158
Alignment:
Q  502 agttcctcttttctcgtctcttattttagctgcgtgataatattttgtta 551  Q
    ||||| ||||||||||||| || |||||||||||| ||||||||| ||||    
T  9358207 agttcttcttttctcgtctgttgttttagctgcgtaataatatttggtta 9358158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 275 - 561
Target Start/End: Complemental strand, 16183913 - 16183636
Alignment:
Q  275 agtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 374  Q
    |||||||| |||||||||||||| |||  ||||||||||||||||||||||||||||        ||| ||||||||||||||  ||||||||| |||||    
T  16183913 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattctcctatttc-aagagagag-ggtaa 16183824  T
Q  375 ttgtactctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgag 473  Q
    ||   ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16183823 tttgtctctccttgtatttagagagaggtcttgtaattgtcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgag 16183724  T
Q  474 gggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16183723 gggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc 16183636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 269 - 561
Target Start/End: Original strand, 30235038 - 30235334
Alignment:
Q  269 tagagtagtgagagaaaaaatatagagagaaaaattagtttctcctg-tgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagaga 365  Q
    |||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||| ||  | ||||||||  ||||||||||||||||||||||||    
T  30235038 tagagtagtgagaggaaaaatatagagagaaaaattagtttctccttatgaggtttctcttacgtagtgttagtgtttgtattctcctatttataagaga 30235137  T
Q  366 gagtggtaattgtactctccttgtatttag-agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttt-cccttt 463  Q
    |||||||||||||||||||||| ||  ||| |||||||||||||||||||||| | ||| |||||||| |||||||||  ||||||||||||| ||| ||    
T  30235138 gagtggtaattgtactctccttataaataggagagaggtcctgtaatttcttctagttattgaaagttttctactcttatcccgtggtttttttcccctt 30235237  T
Q  464 atttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc 561  Q
    ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| | | |||||||||||| || ||||||||||| ||||||||||||    
T  30235238 attcgttgaggggtttccacgtaaa-tattgtgtgttcagttcctcttttctcattttttattttagctgtgtaataatattttgctactctggtacc 30235334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 344 - 590
Target Start/End: Complemental strand, 8140183 - 8139940
Alignment:
Q  344 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg 443  Q
    ||||||||||||||  ||||||||| |||||||   ||||||||||||| ||||||||||| | |||||||||||||| |||||||||| |||| ||||     
T  8140183 gtattctcctatttc-aagagagag-ggtaatttgtctctccttgtattaagagagaggtcttataatttcttccactgagtgaaagttttctaatctta 8140086  T
Q  444 ccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataata 543  Q
    |||| ||||||| |||| |||||||||||||||||||||| |||| ||||||| |||||||| |||||||||| |||||||||||||||| |||||||||    
T  8140085 ccccatggttttctccccttatttgttgaggggtttccacataaa-tattgtgcgttcagtttctcttttctcatctcttattttagctgtgtgataata 8139987  T
Q  544 ttttgttactctggtacctaatagtggtatcagagcccttggttcgt 590  Q
    |||||||||||||||||| || |||||||| |||||| |||||||||    
T  8139986 ttttgttactctggtacccaacagtggtattagagccattggttcgt 8139940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 380 - 646
Target Start/End: Complemental strand, 8138645 - 8138384
Alignment:
Q  380 ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgaggggttt 479  Q
    |||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||| ||||||||| |||| || |||||| ||||||||    
T  8138645 ctctccttgtatttagagggaggtcttgtaatttcttccatttagtgaaagttctctaatcttgcctcgtggttttctccccttgtttgttaaggggttt 8138546  T
Q  480 ccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaatagtggtatcagagc 579  Q
    |||| | || || |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||| ||||||| |||| || |||||||| |||||    
T  8138545 ccacat-aattactgtgtgttaagtttttcttttctcgtctcttattttagctgcgtgataatactttgatactctgctacccaacagtggtattagagc 8138447  T
Q  580 ccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgct 646  Q
    | ||||||||| |  ||||||| || |     |||| || |||||||||||||||||||||||||||    
T  8138446 cattggttcgttgtcgttattctgccg----caactggtcgagtggtaagaaaaatcttagtatgct 8138384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 566 - 651
Target Start/End: Original strand, 25441076 - 25441161
Alignment:
Q  566 agtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 651  Q
    ||||||||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25441076 agtggtatcagagccattgatttgtagttgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 25441161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 408 - 553
Target Start/End: Complemental strand, 5102749 - 5102606
Alignment:
Q  408 taatttcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcc 507  Q
    |||||||| ||||||||| |||||| ||||||||||| || ||| |||||||| ||||||||||| |||||| || || ||||||| ||| || ||| ||    
T  5102749 taatttctcccacttagtaaaagttatctactcttgctccatgg-tttttccccttatttgttga-gggttttcatgt-aaatattatgtatttagtccc 5102653  T
Q  508 tc-ttttctcgtctcttattttagctgcgtgataatattttgttact 553  Q
    || ||||||| ||| ||||||||| || |||||||||||||||||||    
T  5102652 tctttttctcatcttttattttagttgagtgataatattttgttact 5102606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 462 - 561
Target Start/End: Complemental strand, 36528518 - 36528420
Alignment:
Q  462 ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc 561  Q
    ||||| || |||||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||||||| ||||| ||  || |||||||||||| ||||    
T  36528518 ttattcgtggaggggtttccacgtaaa-tattgtgtgttcaattcctctattctcatctcttattttagttgcgtaattttactttgttactctgatacc 36528420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 174; Significance: 3e-93; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 275 - 564
Target Start/End: Complemental strand, 27508 - 27228
Alignment:
Q  275 agtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 374  Q
    |||||||| |||||||||||||| |||  ||||||||||||||||||||||||||||        ||| |||||| |||||||  |||||||| ||||||    
T  27508 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattcacctatttc-aagagaga-tggtaa 27419  T
Q  375 ttgtactctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgag 473  Q
    ||   ||||||||||||||||||||| ||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27418 tttgtctctccttgtatttagagagaagtattgtaattgtcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgag 27319  T
Q  474 gggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaa 564  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27318 gggtttccacgtaaagtattgtgtgttcagtttctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaa 27228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 1e-86; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 275 - 564
Target Start/End: Original strand, 46191266 - 46191544
Alignment:
Q  275 agtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 374  Q
    |||||||| |||||||||||||| |||  ||||||||||||||||||||||||||||        ||| ||||||||||||||  ||||||||| |||||    
T  46191266 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattctcctatttc-aagagagag-ggtaa 46191355  T
Q  375 ttgtactctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgag 473  Q
    ||   |||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  46191356 tttgtctctccttctatttagagagaagtcttgtaattgtcttccacttagtgaaagttctctactcttgtcccgtggttttttccccttatttgttgag 46191455  T
Q  474 gggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaa 564  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  46191456 gggtttccacgtaaaatat--tgtgttcagttcctcttttctcgtctcttattttagctgcatgataatattttgttactctggttcctaa 46191544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 380 - 564
Target Start/End: Original strand, 4130215 - 4130399
Alignment:
Q  380 ctctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgaggggtt 478  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4130215 ctctccttgtatttagagagaagtcttgtaattatcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgagggatt 4130314  T
Q  479 tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaa 564  Q
    ||||||| |||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||  ||||||||    
T  4130315 tccacgt-aaattttgtgtgttcagttcctcttttctcgtcacttattttagttgcgtgataatattttgttactcaagtacctaa 4130399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 380 - 561
Target Start/End: Complemental strand, 30697300 - 30697120
Alignment:
Q  380 ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgaggggttt 479  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  30697300 ctctccttgtatttagaaagaggtcttgtaatttcttccacttagtgaaagttctctactcttgccacgtggctttttccccttatttgttgaggggttt 30697201  T
Q  480 ccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc 561  Q
    |||||| ||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  30697200 ccacgt-aaatattttgtgttaagttcctcttttctcgtctcttatgttagctgcgtgataatattttgttactctagtacc 30697120  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 344 - 424
Target Start/End: Complemental strand, 30674865 - 30674787
Alignment:
Q  344 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttag 424  Q
    ||||||||||||| | |||||||| || ||||||| |||||||| | ||||| |||||||  | |||||||||||||||||    
T  30674865 gtattctcctatt-acaagagagaatg-taattgttctctccttatttttagtgagaggttgtataatttcttccacttag 30674787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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