View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18363_low_22 (Length: 207)
Name: NF18363_low_22
Description: NF18363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18363_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 49690952 - 49690768
Alignment:
| Q |
12 |
gttccaaaaggagtgggaggagggagggtaatattaacatagctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatgg |
111 |
Q |
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| T |
49690952 |
gttccaaaaggagtgggaggagggagggtaatattaacatagctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatgg |
49690853 |
T |
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| Q |
112 |
aaatagggttgccaatggaccagtgattatcaatctttttaacttggaagagttttccacttttgattaactggacatacttcat |
196 |
Q |
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| T |
49690852 |
aaatagtgttgccaatggaccagtgattatcaatctttttaacttggaagagttttcctcttttggttaactggacatacttcat |
49690768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 49679317 - 49679133
Alignment:
| Q |
12 |
gttccaaaaggagtgggaggagggagggtaatattaacatagctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatgg |
111 |
Q |
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| T |
49679317 |
gttccaaaaggagaggaaggaaggagtgtaatattaacatggctgaatgcctcacaagcattcttctccaaaagcttggtgatattggggtcaataatgg |
49679218 |
T |
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| Q |
112 |
aaatagggttgccaatggaccagtgattatcaatctttttaacttggaagagttttccacttttgattaactggacatacttcat |
196 |
Q |
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| T |
49679217 |
aaatagtgttgccaatggacccgcgattatcaatgtttgtaacttgaaagagttttcctcctttggttaactggacgtgcttcat |
49679133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 49686683 - 49686576
Alignment:
| Q |
12 |
gttccaaaaggagtgggaggagggagggtaatattaacatagctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatgg |
111 |
Q |
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| T |
49686683 |
gttccaaaaggagagggaggagggagagtgatat---catagctaaaggcctcgcaagcatttttctgcaaaagcttggtgaaattcagatcaacaatgg |
49686587 |
T |
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| Q |
112 |
aaatagggttg |
122 |
Q |
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|||||| |||| |
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| T |
49686586 |
aaatagtgttg |
49686576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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