View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18363_low_23 (Length: 205)

Name: NF18363_low_23
Description: NF18363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18363_low_23
NF18363_low_23
[»] chr8 (27 HSPs)
chr8 (1-93)||(38296684-38296776)
chr8 (127-205)||(30999655-30999733)
chr8 (127-198)||(43275538-43275609)
chr8 (127-198)||(40918870-40918941)
chr8 (127-198)||(2540070-2540143)
chr8 (127-198)||(11174362-11174435)
chr8 (127-198)||(40058442-40058515)
chr8 (127-195)||(3585516-3585586)
chr8 (127-195)||(11646467-11646537)
chr8 (127-198)||(7146978-7147051)
chr8 (127-198)||(37345636-37345709)
chr8 (127-195)||(36068145-36068215)
chr8 (127-198)||(20546428-20546499)
chr8 (128-205)||(27035063-27035141)
chr8 (127-197)||(13881094-13881167)
chr8 (127-197)||(28326797-28326866)
chr8 (157-198)||(37510363-37510404)
chr8 (87-127)||(45278717-45278757)
chr8 (88-127)||(27034995-27035034)
chr8 (151-197)||(35866705-35866751)
chr8 (88-126)||(36068078-36068116)
chr8 (89-127)||(43275637-43275675)
chr8 (90-127)||(3585451-3585488)
chr8 (90-123)||(7146913-7146946)
chr8 (90-127)||(8697914-8697951)
chr8 (90-127)||(40918969-40919006)
chr8 (90-127)||(41307977-41308014)
[»] chr6 (19 HSPs)
chr6 (127-198)||(7761366-7761437)
chr6 (127-205)||(1605644-1605724)
chr6 (127-198)||(8626547-8626620)
chr6 (127-198)||(29260257-29260330)
chr6 (127-198)||(30734622-30734695)
chr6 (127-205)||(13757273-13757353)
chr6 (127-198)||(4129492-4129565)
chr6 (127-194)||(31559879-31559948)
chr6 (128-198)||(17942511-17942583)
chr6 (129-198)||(8235691-8235762)
chr6 (127-175)||(30734772-30734820)
chr6 (127-205)||(15064826-15064906)
chr6 (127-197)||(14287054-14287125)
chr6 (127-197)||(21277574-21277645)
chr6 (127-173)||(33845449-33845495)
chr6 (90-127)||(1605579-1605616)
chr6 (90-127)||(7761301-7761338)
chr6 (90-127)||(29260192-29260229)
chr6 (157-197)||(30235447-30235487)
[»] chr2 (18 HSPs)
chr2 (127-198)||(1646354-1646425)
chr2 (127-198)||(39938235-39938308)
chr2 (127-205)||(3518973-3519053)
chr2 (127-198)||(1102568-1102641)
chr2 (127-198)||(23366854-23366927)
chr2 (139-205)||(22388267-22388335)
chr2 (127-187)||(37673887-37673949)
chr2 (127-205)||(12969871-12969951)
chr2 (127-192)||(34242042-34242107)
chr2 (137-197)||(4917839-4917899)
chr2 (90-122)||(34222058-34222090)
chr2 (127-187)||(39562037-39562097)
chr2 (127-197)||(14779844-14779914)
chr2 (90-127)||(1102503-1102540)
chr2 (90-127)||(3518908-3518945)
chr2 (90-127)||(12969979-12970016)
chr2 (90-127)||(34224394-34224431)
chr2 (91-127)||(23366790-23366826)
[»] chr1 (31 HSPs)
chr1 (127-198)||(47037991-47038062)
chr1 (127-198)||(23045418-23045491)
chr1 (127-198)||(40783796-40783869)
chr1 (127-195)||(284398-284468)
chr1 (127-198)||(321691-321764)
chr1 (127-203)||(23526305-23526383)
chr1 (127-205)||(52037254-52037332)
chr1 (127-205)||(24772037-24772117)
chr1 (127-205)||(33082810-33082890)
chr1 (127-198)||(27211103-27211176)
chr1 (127-198)||(46771702-46771775)
chr1 (127-188)||(1837978-1838039)
chr1 (127-198)||(1749372-1749445)
chr1 (127-197)||(52478033-52478103)
chr1 (127-194)||(7765078-7765147)
chr1 (87-127)||(284330-284370)
chr1 (87-127)||(23045519-23045559)
chr1 (130-197)||(24876633-24876699)
chr1 (133-197)||(31003926-31003992)
chr1 (134-197)||(34458863-34458926)
chr1 (127-185)||(40562733-40562792)
chr1 (88-127)||(41959076-41959115)
chr1 (130-197)||(31061594-31061662)
chr1 (90-127)||(3943060-3943097)
chr1 (90-127)||(9588670-9588707)
chr1 (90-127)||(13985007-13985044)
chr1 (127-197)||(18396760-18396832)
chr1 (90-127)||(44227848-44227885)
chr1 (90-127)||(47038090-47038127)
chr1 (157-197)||(27143151-27143191)
chr1 (91-127)||(27211204-27211240)
[»] chr7 (22 HSPs)
chr7 (127-198)||(47110516-47110587)
chr7 (127-198)||(25614492-25614563)
chr7 (127-198)||(10981573-10981646)
chr7 (127-198)||(27813876-27813949)
chr7 (127-198)||(40349025-40349098)
chr7 (127-198)||(36453263-36453336)
chr7 (127-189)||(16360449-16360511)
chr7 (127-197)||(16662161-16662231)
chr7 (127-197)||(17636521-17636591)
chr7 (127-192)||(7743542-7743608)
chr7 (127-192)||(3091582-3091649)
chr7 (88-127)||(25614591-25614630)
chr7 (128-186)||(27021566-27021624)
chr7 (127-198)||(27942178-27942251)
chr7 (127-205)||(3498886-3498966)
chr7 (90-127)||(40348960-40348997)
chr7 (127-197)||(37983221-37983289)
chr7 (36-90)||(43002341-43002396)
chr7 (90-127)||(10981508-10981545)
chr7 (90-127)||(25060149-25060186)
chr7 (90-127)||(27813811-27813848)
chr7 (151-188)||(28200298-28200335)
[»] chr3 (23 HSPs)
chr3 (127-198)||(36881347-36881418)
chr3 (127-198)||(198920-198993)
chr3 (127-198)||(13364908-13364981)
chr3 (127-198)||(23088070-23088143)
chr3 (127-198)||(46694249-46694322)
chr3 (127-195)||(19241810-19241880)
chr3 (127-198)||(3383141-3383214)
chr3 (127-205)||(43750202-43750282)
chr3 (127-194)||(29375203-29375272)
chr3 (127-197)||(19897067-19897139)
chr3 (153-198)||(27707127-27707172)
chr3 (87-127)||(198852-198892)
chr3 (127-192)||(37781002-37781069)
chr3 (83-127)||(38805238-38805282)
chr3 (151-197)||(18356007-18356053)
chr3 (89-127)||(36881281-36881319)
chr3 (90-127)||(3383076-3383113)
chr3 (151-192)||(6901655-6901696)
chr3 (90-127)||(12094582-12094619)
chr3 (127-181)||(13702834-13702890)
chr3 (90-127)||(29375138-29375175)
chr3 (127-188)||(44522506-44522567)
chr3 (87-127)||(46694350-46694390)
[»] chr4 (32 HSPs)
chr4 (127-205)||(12071626-12071706)
chr4 (127-205)||(34324714-34324794)
chr4 (127-198)||(24706386-24706459)
chr4 (127-198)||(25704716-25704789)
chr4 (127-205)||(22321399-22321479)
chr4 (127-194)||(21310490-21310559)
chr4 (127-198)||(40122624-40122697)
chr4 (127-198)||(44568902-44568975)
chr4 (127-198)||(50767929-50768002)
chr4 (127-198)||(14261109-14261182)
chr4 (127-198)||(21661674-21661747)
chr4 (127-198)||(21670438-21670511)
chr4 (127-205)||(20249145-20249224)
chr4 (128-197)||(32543547-32543617)
chr4 (134-198)||(21064834-21064898)
chr4 (127-197)||(20714488-20714560)
chr4 (127-198)||(31892303-31892372)
chr4 (90-127)||(22321507-22321544)
chr4 (127-192)||(6129093-6129160)
chr4 (127-175)||(1988100-1988150)
chr4 (151-197)||(19692814-19692860)
chr4 (151-197)||(19703399-19703445)
chr4 (90-127)||(12071561-12071598)
chr4 (90-127)||(14261044-14261081)
chr4 (90-127)||(21310425-21310462)
chr4 (90-127)||(24706487-24706524)
chr4 (90-127)||(25704651-25704688)
chr4 (152-189)||(26676714-26676751)
chr4 (90-127)||(34324823-34324860)
chr4 (90-127)||(40122725-40122762)
chr4 (90-123)||(44568837-44568870)
chr4 (128-197)||(51777687-51777755)
[»] scaffold1431 (1 HSPs)
scaffold1431 (127-198)||(38-111)
[»] chr5 (21 HSPs)
chr5 (127-198)||(10285196-10285269)
chr5 (127-198)||(12806992-12807065)
chr5 (127-198)||(25773714-25773787)
chr5 (127-198)||(40886749-40886822)
chr5 (127-198)||(30720631-30720704)
chr5 (127-198)||(36561238-36561311)
chr5 (127-198)||(37900763-37900836)
chr5 (127-205)||(7277554-7277634)
chr5 (127-205)||(25683360-25683440)
chr5 (127-197)||(30403101-30403174)
chr5 (127-185)||(23098386-23098446)
chr5 (127-197)||(734478-734549)
chr5 (127-197)||(16054179-16054249)
chr5 (151-197)||(39070974-39071020)
chr5 (157-197)||(11319656-11319696)
chr5 (87-127)||(30720732-30720772)
chr5 (127-197)||(1056422-1056493)
chr5 (85-127)||(15305228-15305270)
chr5 (90-127)||(12807093-12807130)
chr5 (90-127)||(15304822-15304859)
chr5 (90-127)||(25773649-25773686)
[»] scaffold0062 (1 HSPs)
scaffold0062 (127-198)||(404-475)
[»] scaffold1770 (1 HSPs)
scaffold1770 (127-198)||(227-300)
[»] scaffold0054 (1 HSPs)
scaffold0054 (127-205)||(45519-45599)
[»] scaffold0025 (1 HSPs)
scaffold0025 (128-205)||(65295-65375)
[»] scaffold0056 (1 HSPs)
scaffold0056 (127-197)||(70889-70961)
[»] scaffold0257 (2 HSPs)
scaffold0257 (90-127)||(23467-23504)
scaffold0257 (87-127)||(23876-23916)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 38296776 - 38296684
Alignment:
Q  1 tttttgacagacttctctgtgatggcctgtttttatttctttggtattctattatttccattttattaggaatggggaaggtaaagtattact 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38296776 tttttgacagacttctctgtgatggcctgtttttatttctttggtattctattatttccattttattaggaatggggaaggtaaagtattact 38296684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 30999733 - 30999655
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatttcttctct 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30999733 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttattttttctct 30999655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 43275609 - 43275538
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43275609 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttattt 43275538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 40918941 - 40918870
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40918941 attttgttattttttatgaaaacatgtgtgttttctataatacccttaatcatttattatttcattttattt 40918870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 2540143 - 2540070
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  2540143 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 2540070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 11174435 - 11174362
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  11174435 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 11174362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 40058515 - 40058442
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  40058515 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 40058442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 3585516 - 3585586
Alignment:
Q  127 attttgttatttttgatgaaaatat--gtgtgttttctataatacccttaatcatttattatttcatttta 195  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  3585516 attttgttatttttgatgaaaatatatgtgtgttttctataatacccttaatcatttattatttcatttta 3585586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 11646537 - 11646467
Alignment:
Q  127 attttgttatttttgatgaaaatat--gtgtgttttctataatacccttaatcatttattatttcatttta 195  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  11646537 attttgttatttttgatgaaaatatatgtgtgttttctataatacccttaatcatttattatttcatttta 11646467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 7146978 - 7147051
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  7146978 attttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaatcatttattatttcattttattt 7147051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 37345636 - 37345709
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  37345636 attttgttatttttaatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 37345709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 36068145 - 36068215
Alignment:
Q  127 attttgttatttttgatgaaaatat--gtgtgttttctataatacccttaatcatttattatttcatttta 195  Q
    |||||||||||||| ||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||    
T  36068145 attttgttatttttaatgaaaatatatgtgtgttttctataatacccttaatcattaattatttcatttta 36068215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 20546499 - 20546428
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||||||||||||||||||| |||||||||||| ||| ||||||||||  ||||||||||||||| |||||    
T  20546499 attttgttatttttgatgaaattatgtgtgttttatatgatacccttaacaatttattatttcattatattt 20546428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 27035063 - 27035141
Alignment:
Q  128 ttttgttatttttgatgaaaatatgtgtgt-tttctataatacccttaatcatttattatttcattttatttcttctct 205  Q
    |||| ||||||||||||||| ||||| ||| |||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  27035063 tttttttatttttgatgaaattatgtctgtgtttctataatacccttaaccatttattatttcattctattttttctct 27035141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 13881167 - 13881094
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgtttt---ctataatacccttaatcatttattatttcattttatt 197  Q
    ||||||||||||||||||||| | |||| |||||   |||||||||||||||||||||||||||||||| ||||    
T  13881167 attttgttatttttgatgaaattgtgtgcgtttttttctataatacccttaatcatttattatttcattatatt 13881094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 28326866 - 28326797
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatt 197  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||| |||||  ||||||||||||||| ||||    
T  28326866 attttgttatttttgatgaaattatgtgt-ttttcaataatactcttaactatttattatttcattctatt 28326797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 37510363 - 37510404
Alignment:
Q  157 ttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||| |||||||||||||||||||| |||||||||||||||    
T  37510363 ttttcaataatacccttaatcatttaatatttcattttattt 37510404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 45278757 - 45278717
Alignment:
Q  87 tattactccttccgttttaaaatacatgtccattttggaga 127  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  45278757 tattactccctccgtttcaaaatacatgtccattttggaga 45278717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 88 - 127
Target Start/End: Original strand, 27034995 - 27035034
Alignment:
Q  88 attactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  27034995 attactccctccgtttcaaaatacatgtccattttggaga 27035034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 35866705 - 35866751
Alignment:
Q  151 tgtgtgttttctataatacccttaatcatttattatttcattttatt 197  Q
    ||||| ||||||||||||||||||| |||||||||||| ||| ||||    
T  35866705 tgtgttttttctataatacccttaaacatttattattttattctatt 35866751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 36068078 - 36068116
Alignment:
Q  88 attactccttccgttttaaaatacatgtccattttggag 126  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  36068078 attactccctccgtttcaaaatacatgtccattttggag 36068116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Complemental strand, 43275675 - 43275637
Alignment:
Q  89 ttactccttccgttttaaaatacatgtccattttggaga 127  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  43275675 ttactccctccgtttcaaaatacatgtccattttggaga 43275637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 3585451 - 3585488
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  3585451 tactccctccgtttcaaaatacatgtccattttggaga 3585488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 7146913 - 7146946
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttg 123  Q
    |||||||||||||| |||||||||||||||||||    
T  7146913 tactccttccgtttcaaaatacatgtccattttg 7146946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 8697951 - 8697914
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  8697951 tactccctccgtttcaaaatacatgtccattttggaga 8697914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 40919006 - 40918969
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  40919006 tactccctccgtttcaaaatacatgtccattttggaga 40918969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 41308014 - 41307977
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  41308014 tactccctccgtttcaaaatacatgtccattttggaga 41307977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 7761366 - 7761437
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7761366 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttattt 7761437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 1605644 - 1605724
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttatttcttctct 205  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1605644 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattttttctct 1605724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 8626547 - 8626620
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  8626547 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 8626620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 29260257 - 29260330
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  29260257 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 29260330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 30734695 - 30734622
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  30734695 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 30734622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 13757273 - 13757353
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttatttcttctct 205  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  13757273 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcaattattatttcattttattttttctct 13757353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 4129492 - 4129565
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||    
T  4129492 attttgttattttttatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttattt 4129565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 31559948 - 31559879
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgt--gttttctataatacccttaatcatttattatttcatttt 194  Q
    |||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||    
T  31559948 attttgttatttttgatgaaaatatgtgtatgttttctgtaatacccttaatcatttattatttcatttt 31559879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 17942511 - 17942583
Alignment:
Q  128 ttttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 198  Q
    |||| ||||||||||||||| ||||||  |||| |||||||||||||||| ||||||||||||||||||||||    
T  17942511 tttttttatttttgatgaaattatgtgcgtgttctctataatacccttaaccatttattatttcattttattt 17942583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 8235691 - 8235762
Alignment:
Q  129 tttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||| |||| | ||||||  |||||||||||||||||||||||||||||||||||||| |||||    
T  8235691 tttgttattttttatgatattatgtgtgtgttttctataatacccttaatcatttattatttcattctattt 8235762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 30734820 - 30734772
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaa 175  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30734820 attttgttatttttgatgaaattatgtgtgttttctataatacccttaa 30734772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 15064906 - 15064826
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttatttcttctct 205  Q
    ||||||||||||||||||||| |||||||||  ||| |||| ||||||||| |||||||||||| ||| ||||| ||||||    
T  15064906 attttgttatttttgatgaaattatgtgtgtgttttttatactacccttaaccatttattatttgattatattttttctct 15064826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 14287054 - 14287125
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg-tgttttctataatacccttaatcatttattatttcattttatt 197  Q
    |||||||||||||| |||||| | |||| | ||||||||||||||||||  | |||||||||||||||||||    
T  14287054 attttgttattttttatgaaattctgtgcttttttctataatacccttacccctttattatttcattttatt 14287125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 21277645 - 21277574
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgtttt-ctataatacccttaatcatttattatttcattttatt 197  Q
    |||||||||||||| |||||||| | |||||||| |||||||||||||||| ||||| || |||||| ||||    
T  21277645 attttgttattttttatgaaaatttatgtgtttttctataatacccttaattatttagtacttcattctatt 21277574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 33845495 - 33845449
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataataccctt 173  Q
    ||||||||||||||||||||| ||||| | ||||||||| |||||||    
T  33845495 attttgttatttttgatgaaattatgtattttttctatagtaccctt 33845449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 1605579 - 1605616
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  1605579 tactccctccgtttcaaaatacatgtccattttggaga 1605616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 7761301 - 7761338
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  7761301 tactccctccgtttcaaaatacatgtccattttggaga 7761338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 29260192 - 29260229
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  29260192 tactccctccgtttcaaaatacatgtccattttggaga 29260229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 30235487 - 30235447
Alignment:
Q  157 ttttctataatacccttaatcatttattatttcattttatt 197  Q
    ||||||||| ||| |||||||||||||||||||||| ||||    
T  30235487 ttttctatattactcttaatcatttattatttcattctatt 30235447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 6e-33; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 1646354 - 1646425
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1646354 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttattt 1646425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 39938235 - 39938308
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  39938235 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 39938308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 3518973 - 3519053
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttatttcttctct 205  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  3518973 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaataatttattatttcattttattttttctct 3519053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 1102568 - 1102641
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||    
T  1102568 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttattt 1102641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 23366854 - 23366927
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  23366854 attttgttattttttatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 23366927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 22388335 - 22388267
Alignment:
Q  139 ttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttatttcttctct 205  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22388335 ttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattttttctct 22388267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 37673949 - 37673887
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatt 187  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  37673949 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatt 37673887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 12969951 - 12969871
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttatttcttctct 205  Q
    ||||||||||||||||||||| ||||||| |  |||||||||||||||||| |||||||||||| ||| ||||| ||||||    
T  12969951 attttgttatttttgatgaaattatgtgtatattttctataatacccttaaccatttattattttattctattttttctct 12969871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 34242042 - 34242107
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcatt 192  Q
    ||||||||||||||||||||| | ||||| |||| | ||| |||||||  ||||||||||||||||    
T  34242042 attttgttatttttgatgaaattctgtgttttttttgtaacacccttacccatttattatttcatt 34242107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 4917839 - 4917899
Alignment:
Q  137 ttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatt 197  Q
    ||||||| ||| ||||||| ||||||||||||  |||||| ||||||||||||||| ||||    
T  4917839 ttttgataaaattatgtgttttttctataataatcttaattatttattatttcattctatt 4917899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 34222058 - 34222090
Alignment:
Q  90 tactccttccgttttaaaatacatgtccatttt 122  Q
    |||||||||||||||||||||||||||||||||    
T  34222058 tactccttccgttttaaaatacatgtccatttt 34222090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 39562097 - 39562037
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatt 187  Q
    |||||||||||||||| |||| ||| | |||||| | |||||||||||| |||||||||||    
T  39562097 attttgttatttttgaagaaattatttttgttttttctaatacccttaaccatttattatt 39562037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 14779844 - 14779914
Alignment:
Q  127 attttgttatttttgatgaaa--atatgtgtgttttctataatacccttaatcatttattatttcattttatt 197  Q
    ||||| |||||||||||||||  || ||||| ||||||||||||  |||| ||||||||||||||||| ||||    
T  14779844 atttttttatttttgatgaaattatttgtgttttttctataata--cttactcatttattatttcattatatt 14779914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 1102503 - 1102540
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  1102503 tactccctccgtttcaaaatacatgtccattttggaga 1102540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 3518908 - 3518945
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  3518908 tactccctccgtttcaaaatacatgtccattttggaga 3518945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 12970016 - 12969979
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  12970016 tactccctccgtttcaaaatacatgtccattttggaga 12969979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 34224431 - 34224394
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  34224431 tactccctccgtttcaaaatacatgtccattttggaga 34224394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 23366790 - 23366826
Alignment:
Q  91 actccttccgttttaaaatacatgtccattttggaga 127  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  23366790 actccctccgtttcaaaatacatgtccattttggaga 23366826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 6e-33; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 47038062 - 47037991
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47038062 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttattt 47037991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 23045491 - 23045418
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  23045491 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 23045418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 40783869 - 40783796
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  40783869 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 40783796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 284398 - 284468
Alignment:
Q  127 attttgttatttttgatgaaaatat--gtgtgttttctataatacccttaatcatttattatttcatttta 195  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  284398 attttgttatttttgatgaaaatatatgtgtgttttctataatacccttaatcatttattatttcatttta 284468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 321691 - 321764
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||    
T  321691 attttgttatttttgatgaaaatatgtgtgtgttttctataatatccttaatcatttattatttcattttattt 321764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 23526305 - 23526383
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttatttcttct 203  Q
    ||||||||||||||||||||| ||||||  ||||||||||||||||||||| |||||||||||||||| ||||| ||||    
T  23526305 attttgttatttttgatgaaattatgtgtgtgttttctataatacccttaaccatttattatttcattctattttttct 23526383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 52037332 - 52037254
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatttcttctct 205  Q
    ||||| ||||||||||| ||| ||||||||||||||||||||| ||||| |||||||||||||||| ||||| ||||||    
T  52037332 attttattatttttgataaaattatgtgtgttttctataatactcttaaccatttattatttcattctattttttctct 52037254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 24772117 - 24772037
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttatttcttctct 205  Q
    ||||||||||||||||||||| |||||||||  |||||||||||||||||| |||||||||||| ||| ||||| ||||||    
T  24772117 attttgttatttttgatgaaattatgtgtgtattttctataatacccttaaccatttattattttattctattttttctct 24772037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 33082810 - 33082890
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttatttcttctct 205  Q
    ||||||||||||||||||||| |||||||||  |||||||||||||||||| |||||||||||| ||| ||||| ||||||    
T  33082810 attttgttatttttgatgaaattatgtgtgtattttctataatacccttaaccatttattattttattctattttttctct 33082890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 27211176 - 27211103
Alignment:
Q  127 attttgttatttttgatgaaa--atatgtgtgttttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||||||| |||||||||||| ||| |||||    
T  27211176 attttgttatttttgaggaaattatatgtgtgttttctataatacccttaaccatttattattttattctattt 27211103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 46771702 - 46771775
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||||||||||||||||||| ||||||  ||||||||||||||||||||| |||||||| ||||||| |||||    
T  46771702 attttgttatttttgatgaaattatgtgtgtgttttctataatacccttaaccatttattttttcattctattt 46771775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 1838039 - 1837978
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattattt 188  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||  ||||||||||||    
T  1838039 attttgttatttttgatgaaattatgtgttttttctataatacccttacccatttattattt 1837978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 1749372 - 1749445
Alignment:
Q  127 attttgttatttttgatgaaa--atatgtgtgttttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||  ||||||||||||||||||||| | |||| |||||||||||| ||| |||||    
T  1749372 attttgttatttttgatgaaattatatgtgtgttttctataatagcattaaccatttattattttattctattt 1749445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 52478033 - 52478103
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatt 197  Q
    ||||||||||||||||||||| | ||||| |||||||||||| ||||||  |||||| |||||||| ||||    
T  52478033 attttgttatttttgatgaaattttgtgttttttctataataaccttaaaaatttatcatttcattctatt 52478103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 7765078 - 7765147
Alignment:
Q  127 attttgttatttttgatgaaa--atatgtgtgttttctataatacccttaatcatttattatttcatttt 194  Q
    ||||||||||||||| |||||  ||||||||||||||  |||||||| ||| |||||||||||| |||||    
T  7765078 attttgttatttttggtgaaattatatgtgtgttttccgtaatacccataaccatttattatttaatttt 7765147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 284330 - 284370
Alignment:
Q  87 tattactccttccgttttaaaatacatgtccattttggaga 127  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  284330 tattactccctccgtttcaaaatacatgtccattttggaga 284370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 23045559 - 23045519
Alignment:
Q  87 tattactccttccgttttaaaatacatgtccattttggaga 127  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  23045559 tattactccctccgtttcaaaatacatgtccattttggaga 23045519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 24876633 - 24876699
Alignment:
Q  130 ttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatt 197  Q
    |||||||||||||||| | ||||||| |||||||||||||| || | ||||||| |||||||| ||||    
T  24876633 ttgttatttttgatgatattatgtgt-ttttctataatacctttgaccatttatcatttcattctatt 24876699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 31003992 - 31003926
Alignment:
Q  133 ttatttttgatgaaaatatgtgtgtttt--ctataatacccttaatcatttattatttcattttatt 197  Q
    |||||||| |||||| ||||||| ||||  ||||||||||||||| |||||||||||| ||| ||||    
T  31003992 ttatttttaatgaaagtatgtgtattttttctataatacccttaaccatttattatttaattctatt 31003926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 34458926 - 34458863
Alignment:
Q  134 tatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatt 197  Q
    ||||||| |||||| | ||||| |||||||||||| ||||| | ||||||||||||||| ||||    
T  34458926 tattttttatgaaattctgtgttttttctataataaccttactaatttattatttcattctatt 34458863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 40562792 - 40562733
Alignment:
Q  127 attttgttatttttgatgaaa-atatgtgtgttttctataatacccttaatcatttatta 185  Q
    ||||||||||||||||| ||  |||| |||||||||||||||||| |||| |||||||||    
T  40562792 attttgttatttttgataaattatatatgtgttttctataataccattaaccatttatta 40562733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 88 - 127
Target Start/End: Original strand, 41959076 - 41959115
Alignment:
Q  88 attactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  41959076 attactccctccgtttcaaaatacatgtccattttggaga 41959115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 197
Target Start/End: Complemental strand, 31061662 - 31061594
Alignment:
Q  130 ttgttatttttgatgaaaatatgtgtg--ttttctataatacccttaatcatttattatttcattttatt 197  Q
    ||||||||||| |||||| ||||||||  ||||| ||||||||| ||| |||||||||||||||| ||||    
T  31061662 ttgttattttttatgaaattatgtgtgttttttccataataccc-taaccatttattatttcattatatt 31061594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 3943060 - 3943097
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  3943060 tactccctccgtttcaaaatacatgtccattttggaga 3943097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 9588670 - 9588707
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  9588670 tactccctccgtttcaaaatacatgtccattttggaga 9588707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 13985044 - 13985007
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  13985044 tactccatccgtttcaaaatacatgtccattttggaga 13985007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 18396760 - 18396832
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtg--ttttctataatacccttaatcatttattatttcattttatt 197  Q
    |||||||||||||| |||||| ||||||||  ||||||||||||   |||| |||| ||||||||||| ||||    
T  18396760 attttgttattttttatgaaattatgtgtggtttttctataatatatttaaccattcattatttcattctatt 18396832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 44227848 - 44227885
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  44227848 tactccctccgtttcaaaatacatgtccattttggaga 44227885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 47038127 - 47038090
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  47038127 tactccatccgtttcaaaatacatgtccattttggaga 47038090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 27143191 - 27143151
Alignment:
Q  157 ttttctataatacccttaatcatttattatttcattttatt 197  Q
    ||||||||||||  |||||||||||||||||||||| ||||    
T  27143191 ttttctataatattcttaatcatttattatttcattctatt 27143151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 27211240 - 27211204
Alignment:
Q  91 actccttccgttttaaaatacatgtccattttggaga 127  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  27211240 actccctccgtttcaaaatacatgtccattttggaga 27211204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 1e-30; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 47110516 - 47110587
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47110516 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattattttattttattt 47110587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 25614563 - 25614492
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  25614563 attttgttatttttgatgaaaatatgtgtgttttctgaaatacccttaatcatttattatttcattttattt 25614492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 10981573 - 10981646
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  10981573 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 10981646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 27813876 - 27813949
Alignment:
Q  127 attttgttatttttgatgaaaatatgt--gtgttttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  27813876 attttgttatttttgatgaaaatatgtatgtgttttctataatacccttaatcatttattatttcattttattt 27813949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 40349025 - 40349098
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  40349025 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 40349098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 36453336 - 36453263
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgtttt--ctataatacccttaatcatttattatttcattttattt 198  Q
    ||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  36453336 attttattatttttgatgaaaatatgtgtgttttttctataatacccttaatcatttattatttcattttattt 36453263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 16360449 - 16360511
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttc 189  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||||||| |||||||||||||    
T  16360449 attttgttatttttgatgaaattctgtgttttttctataatacccttaaccatttattatttc 16360511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 16662161 - 16662231
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatt 197  Q
    ||||||||||||||||||||||| ||||| |||| |||||||||||||| |||||||||||| ||| ||||    
T  16662161 attttgttatttttgatgaaaatttgtgttttttttataatacccttaaccatttattattttattatatt 16662231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 17636521 - 17636591
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatt 197  Q
    ||||||||||||||||||||||| ||||| |||| |||||||||||||| |||||||||||| ||| ||||    
T  17636521 attttgttatttttgatgaaaatttgtgttttttttataatacccttaaccatttattattttattatatt 17636591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 7743608 - 7743542
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt-tttctataatacccttaatcatttattatttcatt 192  Q
    ||||||||||||||||||||| ||||||| | ||||||||||||| ||||| |||||||||||||||    
T  7743608 attttgttatttttgatgaaattatgtgtttctttctataataccgttaattatttattatttcatt 7743542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 3091582 - 3091649
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgtttt--ctataatacccttaatcatttattatttcatt 192  Q
    ||||||||||||||||||||| | | ||||||||  ||||||||||||||| ||||||||||||||||    
T  3091582 attttgttatttttgatgaaattctttgtgttttttctataatacccttaaccatttattatttcatt 3091649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 25614630 - 25614591
Alignment:
Q  88 attactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  25614630 attactccttccgtttcaaaatacatgtccattttggaga 25614591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 27021566 - 27021624
Alignment:
Q  128 ttttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattat 186  Q
    |||||||| ||||||||||| ||||| | |||||||||||| ||||||| |||||||||    
T  27021566 ttttgttacttttgatgaaactatgtcttttttctataataaccttaattatttattat 27021624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 27942251 - 27942178
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgtttt--ctataatacccttaatcatttattatttcattttattt 198  Q
    ||||| |||||||| |||| | ||||||||||||  |||||||||| |||| |||||||||||||||| |||||    
T  27942251 atttttttatttttaatgagattatgtgtgttttttctataatacctttaaccatttattatttcattctattt 27942178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 3498966 - 3498886
Alignment:
Q  127 attttgttatttttgatgaaa--atatgtgtgttttctataatacccttaatcatttattatttcattttatttcttctct 205  Q
    |||||||||||||| ||||||   | ||| | |||||||||||||  |||| |||||||||||||||||||||| ||||||    
T  3498966 attttgttattttttatgaaattttttgtatcttttctataatacttttaaccatttattatttcattttattttttctct 3498886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 40348960 - 40348997
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||||||||||| |||||||||||||||||||||||    
T  40348960 tactccttccgtttcaaaatacatgtccattttggaga 40348997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 37983221 - 37983289
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatt 197  Q
    ||||||||||||||||||||| | | ||| ||||  |||||||| |||| |||||||||||||||| ||||    
T  37983221 attttgttatttttgatgaaattttatgtttttt--ataatacctttaaccatttattatttcattatatt 37983289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 43002341 - 43002396
Alignment:
Q  36 tttctttggtattctattattt-ccattttattaggaatggggaaggtaaagtatt 90  Q
    ||||||||||||||||||| |  |||||||||| ||||||||||||||| ||||||    
T  43002341 tttctttggtattctattagtagccattttatttggaatggggaaggtagagtatt 43002396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 10981508 - 10981545
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  10981508 tactccctccgtttcaaaatacatgtccattttggaga 10981545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 25060186 - 25060149
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  25060186 tactccctccgtttcaaaatacatgtccattttggaga 25060149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 27813811 - 27813848
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  27813811 tactccctccgtttcaaaatacatgtccattttggaga 27813848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 28200298 - 28200335
Alignment:
Q  151 tgtgtgttttctataatacccttaatcatttattattt 188  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  28200298 tgtgttttttctataatatccttaatcatttattattt 28200335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 1e-30; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 36881347 - 36881418
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36881347 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaattatttattatttcattttattt 36881418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 198920 - 198993
Alignment:
Q  127 attttgttatttttgatgaaaatat--gtgtgttttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  198920 attttgttatttttgatgaaaatatatgtgtgttttctataatacccttaatcatttattatttcattttattt 198993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 13364908 - 13364981
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  13364908 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 13364981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 23088143 - 23088070
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  23088143 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 23088070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 46694322 - 46694249
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  46694322 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 46694249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 19241880 - 19241810
Alignment:
Q  127 attttgttatttttgatgaaaatat--gtgtgttttctataatacccttaatcatttattatttcatttta 195  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  19241880 attttgttatttttgatgaaaatatatgtgtgttttctataatacccttaatcatttattatttcatttta 19241810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 3383141 - 3383214
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||    
T  3383141 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaacatttattatttcattttattt 3383214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 43750202 - 43750282
Alignment:
Q  127 attttgttatttttgatgaaa--atatgtgtgttttctataatacccttaatcatttattatttcattttatttcttctct 205  Q
    |||||||||||||||||||||  |||||||||||||||||||||| ||||| |||||||||||||||| ||||| ||||||    
T  43750202 attttgttatttttgatgaaattatatgtgtgttttctataatacacttaaccatttattatttcattctattttttctct 43750282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 29375203 - 29375272
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcatttt 194  Q
    ||||| ||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| ||||    
T  29375203 attttcttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcttttt 29375272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 19897139 - 19897067
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgtttt--ctataatacccttaatcatttattatttcattttatt 197  Q
    |||||||||||||| |||||| | | ||||||||  |||||||||||||| || |||||||||||||| ||||    
T  19897139 attttgttattttttatgaaattctttgtgttttttctataatacccttactcttttattatttcattctatt 19897067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 27707172 - 27707127
Alignment:
Q  153 tgtgttttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||| |||||| ||||||||||||| ||||||||    
T  27707172 tgtgttttctataatatccttaaccatttattatttctttttattt 27707127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 198852 - 198892
Alignment:
Q  87 tattactccttccgttttaaaatacatgtccattttggaga 127  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  198852 tattactccctccgtttcaaaatacatgtccattttggaga 198892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 37781002 - 37781069
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgtttt--ctataatacccttaatcatttattatttcatt 192  Q
    ||||| ||||||||||||||| | ||||||||||  |||||||||  |||| ||||||||||||||||    
T  37781002 attttattatttttgatgaaattctgtgtgttttttctataatactattaaccatttattatttcatt 37781069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 38805238 - 38805282
Alignment:
Q  83 aaagtattactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| |||||| |||||||||||||||||||||||||| ||||    
T  38805238 aaagtactactccctccgttttaaaatacatgtccattttagaga 38805282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 18356053 - 18356007
Alignment:
Q  151 tgtgtgttttctataatacccttaatcatttattatttcattttatt 197  Q
    ||||| |||||||||||||||||| |||||||| |||||||| ||||    
T  18356053 tgtgttttttctataatacccttactcatttatcatttcattctatt 18356007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 36881281 - 36881319
Alignment:
Q  89 ttactccttccgttttaaaatacatgtccattttggaga 127  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  36881281 ttactccctccgtttcaaaatacatgtccattttggaga 36881319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 3383076 - 3383113
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  3383076 tactccttccgtttcaaaatatatgtccattttggaga 3383113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 6901655 - 6901696
Alignment:
Q  151 tgtgtgttttctataatacccttaatcatttattatttcatt 192  Q
    ||||| |||||| ||||||||||| |||||||||||||||||    
T  6901655 tgtgttttttctctaatacccttactcatttattatttcatt 6901696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 12094582 - 12094619
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  12094582 tactccctccgtttcaaaatacatgtccattttggaga 12094619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 13702834 - 13702890
Alignment:
Q  127 attttgttatttttgatgaaa--atatgtgtgttttctataatacccttaatcattt 181  Q
    |||||| ||||||||||||||  |||||| |||||||||||||||| |||| |||||    
T  13702834 attttgatatttttgatgaaattatatgtttgttttctataatacctttaaccattt 13702890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 29375138 - 29375175
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  29375138 tactccctccgtttcaaaatacatgtccattttggaga 29375175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 44522506 - 44522567
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattattt 188  Q
    ||||| |||||||| ||||||  |||||| |||||||||||||  |||| ||||||||||||    
T  44522506 attttattattttttatgaaatcatgtgttttttctataatacttttaaccatttattattt 44522567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 46694390 - 46694350
Alignment:
Q  87 tattactccttccgttttaaaatacatgtccattttggaga 127  Q
    ||||||||| ||||||| ||||||||||||| |||||||||    
T  46694390 tattactccctccgtttcaaaatacatgtcctttttggaga 46694350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 12071626 - 12071706
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttatttcttctct 205  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12071626 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattttttctct 12071706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 34324794 - 34324714
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttatttcttctct 205  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34324794 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattttttctct 34324714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 24706459 - 24706386
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  24706459 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 24706386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 25704716 - 25704789
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  25704716 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 25704789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 22321479 - 22321399
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttatttcttctct 205  Q
    |||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22321479 attttgttattttttatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattttttctct 22321399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 21310490 - 21310559
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcatttt 194  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  21310490 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcatttt 21310559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 40122697 - 40122624
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||    
T  40122697 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttattt 40122624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 44568902 - 44568975
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  44568902 attttgttattttttatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 44568975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 50767929 - 50768002
Alignment:
Q  127 attttgttatttttgatgaaaatat--gtgtgttttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||    
T  50767929 attttgttatttttgatgaaaatatatgtgtgttttctataatacccttaataatttattatttcattttattt 50768002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 14261109 - 14261182
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||||||||||||||| ||||||||||  |||||||||||||||||||||| |||||||||||||||||||||    
T  14261109 attttgttatttttgataaaaatatgtgtgtgttttctataatacccttaataatttattatttcattttattt 14261182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 21661747 - 21661674
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||| |||| ||||||||||||||||||||||    
T  21661747 attttattatttttgatgaaaatatgtgtgtgttttctataatacctttaaccatttattatttcattttattt 21661674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 21670511 - 21670438
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||| |||| ||||||||||||||||||||||    
T  21670511 atttttttatttttgatgaaaatatgtgtgtgttttctataatacctttaaccatttattatttcattttattt 21670438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 20249224 - 20249145
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt-tttctataatacccttaatcatttattatttcattttatttcttctct 205  Q
    |||||||||||||||| |||| ||||||||| |||||||||||||||||| |||||||||||| ||| ||||| ||||||    
T  20249224 attttgttatttttgaagaaattatgtgtgtgtttctataatacccttaaccatttattattttattctattttttctct 20249145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 32543547 - 32543617
Alignment:
Q  128 ttttgttatttttgatgaaaatatgtgtgttttct-ataatacccttaatcatttattatttcattttatt 197  Q
    |||||||| ||||||||||| | | |||||||| | |||||||||||||||||||||||||||||||||||    
T  32543547 ttttgttaattttgatgaaattctttgtgtttttttataatacccttaatcatttattatttcattttatt 32543617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 21064834 - 21064898
Alignment:
Q  134 tatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||| |||||||||||| |||||||| |||||  ||||||||||||||| |||||    
T  21064834 tatttttgatgaaattatgtgtgttttttataatactcttaactatttattatttcattctattt 21064898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 20714560 - 20714488
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtg---ttttctataatacccttaatcatttattatttcattttatt 197  Q
    ||||||||||||||||||||| ||||||||   |||||||||||| |||||| |||||||||||||||| ||||    
T  20714560 attttgttatttttgatgaaactatgtgtgtgtttttctataata-ccttaaccatttattatttcattatatt 20714488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 31892303 - 31892372
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||| ||||||||||||||| ||||||  |||||||||||||| || | |||||||||||||||| |||||    
T  31892303 attttattatttttgatgaaattatgtg--ttttctataatacctttgaccatttattatttcattctattt 31892372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 22321544 - 22321507
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||||||||||| |||||||||||||||||||||||    
T  22321544 tactccttccgtttcaaaatacatgtccattttggaga 22321507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 6129160 - 6129093
Alignment:
Q  127 attttgttatttttgatgaaa--atatgtgtgttttctataatacccttaatcatttattatttcatt 192  Q
    ||||||||||||||||| |||   | ||| | ||||||| ||||||||||||||||||||||||||||    
T  6129160 attttgttatttttgataaaattctttgtattttttctacaatacccttaatcatttattatttcatt 6129093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 1988100 - 1988150
Alignment:
Q  127 attttgttatttttgatgaaaatatgt--gtgttttctataatacccttaa 175  Q
    ||||| ||||||||||||||| |||||  ||||||||||||||||||||||    
T  1988100 attttattatttttgatgaaattatgtatgtgttttctataatacccttaa 1988150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 19692814 - 19692860
Alignment:
Q  151 tgtgtgttttctataatacccttaatcatttattatttcattttatt 197  Q
    ||||| |||||||||||| ||||| ||||||||||||||||| ||||    
T  19692814 tgtgttttttctataatatccttactcatttattatttcattctatt 19692860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 19703399 - 19703445
Alignment:
Q  151 tgtgtgttttctataatacccttaatcatttattatttcattttatt 197  Q
    ||||| |||||||||||| ||||| ||||||||||||||||| ||||    
T  19703399 tgtgttttttctataatatccttactcatttattatttcattctatt 19703445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 12071561 - 12071598
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  12071561 tactccctccgtttcaaaatacatgtccattttggaga 12071598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 14261044 - 14261081
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  14261044 tactccctccgtttcaaaatacatgtccattttggaga 14261081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 21310425 - 21310462
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  21310425 tactccctccgtttcaaaatacatgtccattttggaga 21310462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 24706524 - 24706487
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  24706524 tactccatccgtttcaaaatacatgtccattttggaga 24706487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 25704651 - 25704688
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  25704651 tactccctccgtttcaaaatacatgtccattttggaga 25704688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 26676751 - 26676714
Alignment:
Q  152 gtgtgttttctataatacccttaatcatttattatttc 189  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  26676751 gtgttttttctataatacccttactcatttattatttc 26676714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 34324860 - 34324823
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  34324860 tactccctccgtttcaaaatacatgtccattttggaga 34324823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 40122762 - 40122725
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  40122762 tactccctccgtttcaaaatacatgtccattttggaga 40122725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 44568837 - 44568870
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttg 123  Q
    |||||||||||||| |||||||||||||||||||    
T  44568837 tactccttccgtttcaaaatacatgtccattttg 44568870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 51777687 - 51777755
Alignment:
Q  128 ttttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatt 197  Q
    |||| ||| ||||||| ||| | ||||| ||||||||||||| ||||| ||||||||||||||| |||||    
T  51777687 tttttttaattttgataaaattctgtgt-ttttctataatactcttaaccatttattatttcatgttatt 51777755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 111 - 38
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  111 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 38  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 1e-27; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 10285269 - 10285196
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  10285269 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 10285196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 12807065 - 12806992
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  12807065 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 12806992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 25773714 - 25773787
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  25773714 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 25773787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 40886822 - 40886749
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  40886822 attttgttatttttgatgaaaatatgtgtgtattttctataatacccttaatcatttattatttcattttattt 40886749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 30720704 - 30720631
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||||||||  ||| |||||||||||||||||| ||||||||||||||||||    
T  30720704 attttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaatcatctattatttcattttattt 30720631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 36561311 - 36561238
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||||||||||||||||||||  ||||||||||||| |||| ||||||||||||||||||||||    
T  36561311 attttgttatttttgatgaaaatatgtgtgtgttttctataatacctttaaccatttattatttcattttattt 36561238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 37900836 - 37900763
Alignment:
Q  127 attttgttatttttgatgaaa--atatgtgtgttttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||| ||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  37900836 attttgatatttttgatgaaattatatgtgtgttttctataatacccttaaccatttattatttcattctattt 37900763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 7277634 - 7277554
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttatttcttctct 205  Q
    ||||||||||||||||| ||| |||||||||  ||||||||||||| |||| |||||||||||||||| ||||| ||||||    
T  7277634 attttgttatttttgatcaaattatgtgtgtgttttctataatacctttaaccatttattatttcattatattttttctct 7277554  T

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Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 25683440 - 25683360
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttatttcttctct 205  Q
    ||||||||||||||||| ||| |||||||||  |||||||||||||||||| |||||||||||| ||| ||||| ||||||    
T  25683440 attttgttatttttgataaaattatgtgtgtgttttctataatacccttaaccatttattattttattctattttttctct 25683360  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 30403174 - 30403101
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgtttt---ctataatacccttaatcatttattatttcattttatt 197  Q
    ||||||||||||||||||||| | ||||| ||||   ||||||||| ||||||||||| |||||||||||||||    
T  30403174 attttgttatttttgatgaaattctgtgtttttttttctataatactcttaatcatttgttatttcattttatt 30403101  T

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Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 23098446 - 23098386
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttatta 185  Q
    ||||||||||||||||||||| ||||||  ||||| ||||||||||||||| |||||||||    
T  23098446 attttgttatttttgatgaaattatgtgcatgtttcctataatacccttaaccatttatta 23098386  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 734549 - 734478
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgtttt-ctataatacccttaatcatttattatttcattttatt 197  Q
    ||||||| ||| ||||||||| | | |||||||| |||||||||||||| ||||||||||||||||| ||||    
T  734549 attttgtcattattgatgaaattctttgtgtttttctataatacccttactcatttattatttcattctatt 734478  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 16054179 - 16054249
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatt 197  Q
    |||||||||||||| |||||| | ||||| |||||||||||| |||| | |||||||||||| ||| ||||    
T  16054179 attttgttattttttatgaaattttgtgttttttctataatatccttgaccatttattattttattctatt 16054249  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 39070974 - 39071020
Alignment:
Q  151 tgtgtgttttctataatacccttaatcatttattatttcattttatt 197  Q
    ||||| |||||||||||||||||| ||||||||||||||||| ||||    
T  39070974 tgtgttttttctataatacccttactcatttattatttcattctatt 39071020  T

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Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 11319656 - 11319696
Alignment:
Q  157 ttttctataatacccttaatcatttattatttcattttatt 197  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  11319656 ttttctataatacccttactcatttattatttcattctatt 11319696  T

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Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 30720772 - 30720732
Alignment:
Q  87 tattactccttccgttttaaaatacatgtccattttggaga 127  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  30720772 tattactccctccgtttcaaaatacatgtccattttggaga 30720732  T

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Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 1056493 - 1056422
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgtttt-ctataatacccttaatcatttattatttcattttatt 197  Q
    |||||||||||||| |||||| | | |||||||| |||||||||  || |||||||||||||||||| ||||    
T  1056493 attttgttatttttaatgaaattctttgtgtttttctataatactattgatcatttattatttcattatatt 1056422  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 15305270 - 15305228
Alignment:
Q  85 agtattactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||| |||||| ||||||| |||||||||||||||||||||||    
T  15305270 agtagtactccctccgtttcaaaatacatgtccattttggaga 15305228  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 12807130 - 12807093
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  12807130 tactccctccgtttcaaaatacatgtccattttggaga 12807093  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 15304822 - 15304859
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  15304822 tactccctccgttttaaaatacatgtccattttagaga 15304859  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 25773649 - 25773686
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  25773649 tactccctccgtttcaaaatacatgtccattttggaga 25773686  T

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Target: scaffold0062 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 475 - 404
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttattt 198  Q
    ||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  475 attttgttatttttgataaaattatgtgtgttttttataatacccttaatcatttattatttcattctattt 404  T

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Target: scaffold1770 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 227 - 300
Alignment:
Q  127 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 198  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||    
T  227 attttgttattttttatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttattt 300  T

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Target: scaffold0054 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 45519 - 45599
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttatttcttctct 205  Q
    ||||||||||||||||||||| |||||||||  |||||||||||||||||| |||||||||||| ||| ||||| ||||||    
T  45519 attttgttatttttgatgaaattatgtgtgtattttctataatacccttaaccatttattattttattctattttttctct 45599  T

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Target: scaffold0025 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 65375 - 65295
Alignment:
Q  128 ttttgttatttttgatgaaaatatgtgtgtttt---ctataatacccttaatcatttattatttcattttatttcttctct 205  Q
    |||| ||||||||||||||| ||| ||||||||   ||||||||||||||| |||||||||||||||| ||||| ||||||    
T  65375 ttttattatttttgatgaaattatatgtgtttttttctataatacccttaaccatttattatttcattctattttttctct 65295  T

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Target: scaffold0056 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 70889 - 70961
Alignment:
Q  127 attttgttatttttgatgaaaatatgtgtgtttt--ctataatacccttaatcatttattatttcattttatt 197  Q
    ||||||||||||||||||||| | ||||||||||  || ||| |||||||| |||||||||||||||| ||||    
T  70889 attttgttatttttgatgaaattctgtgtgttttttctgtaacacccttaaccatttattatttcattctatt 70961  T

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Target: scaffold0257 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 23467 - 23504
Alignment:
Q  90 tactccttccgttttaaaatacatgtccattttggaga 127  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  23467 tactccctccgtttcaaaatacatgtccattttggaga 23504  T

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Target: scaffold0257; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 23916 - 23876
Alignment:
Q  87 tattactccttccgttttaaaatacatgtccattttggaga 127  Q
    ||||||||| ||||||| |||||||||||||||||| ||||    
T  23916 tattactccatccgtttcaaaatacatgtccattttagaga 23876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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