View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18363_low_5 (Length: 439)
Name: NF18363_low_5
Description: NF18363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18363_low_5 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 64 - 426
Target Start/End: Complemental strand, 18362014 - 18361653
Alignment:
| Q |
64 |
taagtcagccaaactgattttttcagtcacttatcttaaaagaatggttcacaaagaaggcattttaacttcaaatgtgatatgataacttttcactgcc |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18362014 |
taagtcagccaaactgattttttcagtcacttatcttaaaagaaaggttcacaaagaaggcattttaacttcaaatgtgatatgataacttttcactgcc |
18361915 |
T |
|
| Q |
164 |
cattatcaagaagtggagagtttctgtaaggttggagcttctcaaccttatcttcattagatgatttatcacactaaaggatgaaaaagtaacactatca |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18361914 |
cattatcaagaagtggagagtttctgtaaggttggagcttctcaaccttatcttcattagatgatttatcacactaaaggatgaaaaagtaacactatca |
18361815 |
T |
|
| Q |
264 |
attgtcattgaaaaatcaattatatnnnnnnnggtgacaaccggtataagaaagcaaatgaataaaaactgaatttcaaagattctaaacttatttaaat |
363 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18361814 |
attgtcattgaaaaatcaattatat-aaaaaaggttacaaccggtataagaaagcaaatgaataaaaactgaatttcaaagattctaaacttatttaaat |
18361716 |
T |
|
| Q |
364 |
atcgacgcctctgtcgtcattcttgaacaatttctacttgggtaaattgaaaacaaggattct |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18361715 |
atcgacgcctctgtcgtcattcttgaacaatttctacttgggtaaattgaaaacaaggattct |
18361653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 64 - 426
Target Start/End: Original strand, 36600913 - 36601274
Alignment:
| Q |
64 |
taagtcagccaaactgattttttcagtcacttatcttaaaagaatggttcacaaagaaggcattttaacttcaaatgtgatatgataacttttcactgcc |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36600913 |
taagtcagccaaactgattttttcagtcacttatcttaaaagaaaggttcacaaagaaggcattttaacttcaaatgtgatatgataacttttcactgcc |
36601012 |
T |
|
| Q |
164 |
cattatcaagaagtggagagtttctgtaaggttggagcttctcaaccttatcttcattagatgatttatcacactaaaggatgaaaaagtaacactatca |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36601013 |
cattatcaagaagtggagagtttctgtaaggttggagcttctcaaccttatcttcattagatgatttatcacactaaaggatgaaaaagtaacactatca |
36601112 |
T |
|
| Q |
264 |
attgtcattgaaaaatcaattatatnnnnnnnggtgacaaccggtataagaaagcaaatgaataaaaactgaatttcaaagattctaaacttatttaaat |
363 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36601113 |
attgtcattgaaaaatcaattatat-aaaaaaggttacaaccggtataagaaagcaaatgaataaaaactgaatttcaaagattctaaacttatttaaat |
36601211 |
T |
|
| Q |
364 |
atcgacgcctctgtcgtcattcttgaacaatttctacttgggtaaattgaaaacaaggattct |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36601212 |
atcgacgcctctgtcgtcattcttgaacaatttctacttgggtaaattgaaaacaaggattct |
36601274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 10 - 421
Target Start/End: Complemental strand, 36911679 - 36911264
Alignment:
| Q |
10 |
agatgaagaggtcgagtgatagactaaatgacagtcagatcaaacatgtttaagtaagtcagccaaactga-ttttttcagtcacttatcttaaaagaat |
108 |
Q |
| |
|
||||||||||||| | ||||||| |||||| |||| ||||||||||||| |||||||||||| ||| || ||||||||| |||| |||||||||||| |
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|
| T |
36911679 |
agatgaagaggtcatgcgatagaccaaatgattgtcaaatcaaacatgttttagtaagtcagcctaaccgatttttttcagccactaatcttaaaagaaa |
36911580 |
T |
|
| Q |
109 |
ggttcacaaagaaggcattttaacttcaaatgtgatatgataacttttcact----gcccattatcaagaagtggagagtttctgtaaggttggagcttc |
204 |
Q |
| |
|
|||||||||||||||||| |||||| || ||| ||||| |||| |||||| | ||||||| ||||||||| |||| || || | | ||||| |
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|
| T |
36911579 |
agttcacaaagaaggcattgtaacttgtaaggtggtatgagaactcttcactatcagttcattatctagaagtggacagttggagttagatcagtgcttc |
36911480 |
T |
|
| Q |
205 |
tcaaccttatcttcattagatgatttatcacactaaaggatgaaaaagtaacactatcaattgtcattgaaaaatcaattatat-nnnnnnnggtgacaa |
303 |
Q |
| |
|
|| |||||||||||| | |||||||| || ||||||| |||||||||||||| | |||||||| || |||||||| |||| ||| |||| |
|
|
| T |
36911479 |
tccaccttatcttcaattgatgatttgtcgtcctaaaggcagaaaaagtaacacttttaattgtcactgtgaaatcaatcatataaaaaaaaggttacaa |
36911380 |
T |
|
| Q |
304 |
ccggtataagaaagcaaatgaataaaaactgaatttcaaagattctaaacttatttaaatatcgacgcctctgtcgtcattcttgaacaatttctacttg |
403 |
Q |
| |
|
| ||||| ||| |||| ||| || |||||||| | |||||||| ||||| | || | ||| || ||||||||||||| |||||||||||||||||||| |
|
|
| T |
36911379 |
--gttataaaaaaccaaaagaacaataactgaatataaaagattcaaaactgagtttattatagatgcctctgtcgtcactcttgaacaatttctacttg |
36911282 |
T |
|
| Q |
404 |
ggtaaattgaaaacaagg |
421 |
Q |
| |
|
|||||||| | |||||| |
|
|
| T |
36911281 |
agtaaattgcagacaagg |
36911264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 95 - 412
Target Start/End: Original strand, 36663918 - 36664233
Alignment:
| Q |
95 |
tatcttaaaagaatggttcacaaagaaggcattttaacttcaaatgtgatatgataacttttcactgcccattatcaagaagtggagagtttctgtaagg |
194 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| |||| ||| | |||||| |||| ||||||| |||||||| |||||||| |||| ||| ||| |
|
|
| T |
36663918 |
tatcttaaaagaaaggttcacaaaggaggcattgtaacaagaaaggcaatatgagaactcttcactggccattatctagaagtggtgagtcggtgttagg |
36664017 |
T |
|
| Q |
195 |
ttggagcttctcaaccttatcttcattagatgatttatcacactaaaggatgaaaaagtaacactatcaattgtcattgaaaaatcaattatatnnnnnn |
294 |
Q |
| |
|
|||| ||||||| |||| ||||||||| |||||||||||| ||||||| ||||| ||| ||||||||||||||| | |||| |||| || |
|
|
| T |
36664018 |
ttggcgcttctccacctcatcttcatttgatgatttatcatcctaaaggcagaaaaggtatcactatcaattgtcaccgcaaaaacaat--catgaaaaa |
36664115 |
T |
|
| Q |
295 |
nggtgacaaccggtataagaaagcaaatgaataaaaactgaatttcaaagattctaaacttatttaaatatcgacgcctctgtcgtcattcttgaacaat |
394 |
Q |
| |
|
| | ||||| | ||||| ||||||||||||||| |||||||| | |||||||| ||||| |||| | ||| || | | |||||| ||||||| |||||| |
|
|
| T |
36664116 |
agtttacaacagatataaaaaagcaaatgaataacaactgaatatgaaagattcaaaactgattttattatagatggcactgtcgccattcttcaacaat |
36664215 |
T |
|
| Q |
395 |
ttctacttgggtaaattg |
412 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
36664216 |
ttctacttgagtaaattg |
36664233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 150 - 270
Target Start/End: Complemental strand, 29678768 - 29678648
Alignment:
| Q |
150 |
aacttttcactgcccattatcaagaagtggagagtttctgtaaggttggagcttctcaaccttatcttcattagatgatttatcacactaaaggatgaaa |
249 |
Q |
| |
|
|||| |||||||||| ||||| |||||| |||||||| ||| ||||||| ||||||| ||||||||||||| || |||||||| ||||||| |||| |
|
|
| T |
29678768 |
aactcttcactgccctttatctagaagttgagagtttgtgttaggttggtgcttctccgccttatcttcatttgacgatttatcttcctaaaggtggaaa |
29678669 |
T |
|
| Q |
250 |
aagtaacactatcaattgtca |
270 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
29678668 |
aagtaacactatcaattgtca |
29678648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 143 - 421
Target Start/End: Original strand, 36661372 - 36661647
Alignment:
| Q |
143 |
atatgataacttttcactgcccattatcaagaagtggagagtttctgtaaggttggagcttctcaaccttatcttcattagatgatttatcacactaaag |
242 |
Q |
| |
|
|||||| |||| ||||||| |||||||| ||||||||||||| ||| ||||||| ||||||| |||| ||||| ||| |||||||| ||||||| |
|
|
| T |
36661372 |
atatgagaactcttcactggccattatctagaagtggagagtaggtgttaggttggcgcttctcgacctcatctttatttgatgattt-----actaaag |
36661466 |
T |
|
| Q |
243 |
gatgaaaaagtaacactatcaattgtcattgaaaaatcaattatatnnnnnnnggtgacaaccggtataagaaagcaaatgaataaaaactgaatttcaa |
342 |
Q |
| |
|
| |||||||||||||| |||| ||||| || |||| |||| |||| | | ||||| | ||||| |||||||||||| || ||||| || | || |
|
|
| T |
36661467 |
gcagaaaaagtaacactgtcaactgtcactgcaaaaacaatcatatgaaaaaagtttacaacagatataaaaaagcaaatgaacaacaactggatatgaa |
36661566 |
T |
|
| Q |
343 |
agattctaaacttatttaa--atatcgacgcctctgtcgtcattcttgaacaatttctacttgggtaaattgaaaacaagg |
421 |
Q |
| |
|
|||||| ||||| |||| | |||| || | |||||||| ||||||| ||||||||| ||||| |||||||| | |||||| |
|
|
| T |
36661567 |
agattcaaaactgattttattatatagatggctctgtcgccattcttcaacaatttcaacttgagtaaattgcagacaagg |
36661647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 288
Target Start/End: Original strand, 36634211 - 36634459
Alignment:
| Q |
48 |
atcaaacatgtttaagtaa-gtcagccaaactgat-tttttcagtcacttatct-------taaaagaatggttcacaaagaaggcattttaacttcaaa |
138 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||| ||||||||| |||||||| |||||||| |||||||| ||||||||| ||| || | |
|
|
| T |
36634211 |
atcaaacatgtttcagtaaagtcagccaaactgatatttttcagttacttatctgatgtcttaaaagaaaggttcacagagaaggcatcgtaatttgta- |
36634309 |
T |
|
| Q |
139 |
tgtgatatgataacttttcactgcccattatcaagaagtggagagtttctgtaaggttggagcttctcaaccttatcttcattagatgatttatcacact |
238 |
Q |
| |
|
|| |||||| |||| |||||||| ||||||| |||||||||||||| ||| ||||||| |||| || |||||||| ||||| ||| ||| ||| || |
|
|
| T |
36634310 |
tgaaatatgagaactcttcactgctcattatctagaagtggagagttgttgttaggttggtgcttatccaccttatcgtcatttgattattaatcctcct |
36634409 |
T |
|
| Q |
239 |
aaaggatgaaaaagtaacactatcaattgtcattgaaaaatcaattatat |
288 |
Q |
| |
|
||||| ||||||| |||||| ||| |||||| || ||||| ||| |||| |
|
|
| T |
36634410 |
aaaggcagaaaaagaaacactgtcagttgtcactgcaaaattaatcatat |
36634459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 150 - 270
Target Start/End: Complemental strand, 36632131 - 36632009
Alignment:
| Q |
150 |
aacttttcactgcccattatcaagaagtggagagtttctgtaaggttggagcttctcaaccttatcttcattagatgatttatcacactaaagg--atga |
247 |
Q |
| |
|
|||| |||| ||| ||||||| ||||||| |||||| ||| ||||||| ||||||| |||||||||||||| ||||||||||||| ||||||| | | |
|
|
| T |
36632131 |
aactcttcaatgcacattatctagaagtgaagagttgatgttaggttggtgcttctccaccttatcttcatttgatgatttatcaccctaaaggcaaaaa |
36632032 |
T |
|
| Q |
248 |
aaaagtaacactatcaattgtca |
270 |
Q |
| |
|
|||||||| ||| |||||||||| |
|
|
| T |
36632031 |
aaaagtaagactgtcaattgtca |
36632009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 35970018 - 35969928
Alignment:
| Q |
143 |
atatgataacttttcactgcccattatcaagaagtggagagtttctgtaaggttggagcttctcaaccttatcttcattagatgatttatc |
233 |
Q |
| |
|
|||||| |||| |||||||||||||||| ||||||||||||| |||| | ||||| ||||| | ||||| |||||||| ||||||||||| |
|
|
| T |
35970018 |
atatgagaactcttcactgcccattatctagaagtggagagtcgctgttatgttggtgcttccccaccttctcttcattggatgatttatc |
35969928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 35974416 - 35974327
Alignment:
| Q |
143 |
atatgataacttttcactgcccattatcaagaagtggagagtttctgtaaggttggagcttctcaaccttatcttcattagatgatttat |
232 |
Q |
| |
|
|||||| |||| |||||||||||||||| ||||||||||||| || ||||||| ||||| | |||||||||||||| |||||||||| |
|
|
| T |
35974416 |
atatgagaactcttcactgcccattatctagaagtggagagtcggtgataggttggtgcttccccaccttatcttcattggatgatttat |
35974327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 36641604 - 36641727
Alignment:
| Q |
143 |
atatgataacttttcactgcccattatcaagaagtggagagtttctgtaaggttggagcttctcaaccttatcttcattagatgatttatcacactaaag |
242 |
Q |
| |
|
|||||| |||| |||||||||||||||| ||||||||||||| ||| || |||| ||||||| |||||||||| |||||||||||| |||||| |
|
|
| T |
36641604 |
atatgagaactcttcactgcccattatctagaagtggagagtcggtgttagattggtgcttctccttcttatcttcagctgatgatttatcatcctaaag |
36641703 |
T |
|
| Q |
243 |
gatgaaaaagtaacactatcaatt |
266 |
Q |
| |
|
| |||||| ||||||| |||||| |
|
|
| T |
36641704 |
gcagaaaaaataacactgtcaatt |
36641727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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