View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18363_low_7 (Length: 352)

Name: NF18363_low_7
Description: NF18363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18363_low_7
NF18363_low_7
[»] chr7 (16 HSPs)
chr7 (1-242)||(2341419-2341660)
chr7 (234-341)||(2341846-2341953)
chr7 (265-315)||(33072109-33072159)
chr7 (255-320)||(25709394-25709459)
chr7 (255-315)||(33343106-33343166)
chr7 (265-315)||(34270389-34270439)
chr7 (265-315)||(46290138-46290188)
chr7 (265-321)||(22334015-22334071)
chr7 (268-316)||(29692539-29692587)
chr7 (259-314)||(26050462-26050517)
chr7 (259-314)||(26059821-26059876)
chr7 (265-315)||(8420833-8420883)
chr7 (265-315)||(39757110-39757160)
chr7 (255-316)||(29398133-29398194)
chr7 (255-315)||(4969891-4969951)
chr7 (252-316)||(26300686-26300750)
[»] chr8 (12 HSPs)
chr8 (257-315)||(6818137-6818195)
chr8 (252-315)||(3306055-3306118)
chr8 (265-315)||(2161515-2161565)
chr8 (265-324)||(26682196-26682255)
chr8 (269-315)||(5573418-5573464)
chr8 (265-315)||(26363990-26364040)
chr8 (267-315)||(13496709-13496757)
chr8 (255-315)||(14961663-14961723)
chr8 (269-321)||(22838357-22838409)
chr8 (255-315)||(28014858-28014918)
chr8 (268-316)||(38212943-38212991)
chr8 (265-313)||(44091446-44091494)
[»] chr1 (13 HSPs)
chr1 (252-316)||(29635747-29635811)
chr1 (255-320)||(47355373-47355438)
chr1 (252-315)||(23576414-23576477)
chr1 (265-315)||(1502720-1502770)
chr1 (265-314)||(9516709-9516758)
chr1 (250-316)||(1366160-1366226)
chr1 (265-322)||(10896481-10896538)
chr1 (265-314)||(13241885-13241934)
chr1 (265-314)||(35438843-35438892)
chr1 (283-315)||(19066644-19066676)
chr1 (283-315)||(19114534-19114566)
chr1 (255-315)||(25465276-25465336)
chr1 (268-316)||(51920430-51920478)
[»] chr5 (13 HSPs)
chr5 (250-320)||(15240945-15241015)
chr5 (250-314)||(15820339-15820403)
chr5 (265-316)||(35469682-35469733)
chr5 (265-315)||(30839909-30839959)
chr5 (265-315)||(36597707-36597757)
chr5 (265-321)||(31365944-31366000)
chr5 (252-315)||(23995416-23995479)
chr5 (265-316)||(32019983-32020034)
chr5 (265-312)||(40513079-40513126)
chr5 (265-315)||(6863684-6863734)
chr5 (265-314)||(15191001-15191050)
chr5 (255-315)||(3398338-3398398)
chr5 (265-313)||(30893757-30893805)
[»] chr4 (11 HSPs)
chr4 (265-315)||(9759142-9759192)
chr4 (265-315)||(39876958-39877008)
chr4 (265-315)||(51691469-51691519)
chr4 (255-314)||(52391416-52391475)
chr4 (265-315)||(7349816-7349866)
chr4 (265-315)||(40049686-40049736)
chr4 (265-315)||(50352430-50352480)
chr4 (255-315)||(18882267-18882327)
chr4 (283-315)||(25840939-25840971)
chr4 (264-316)||(32279198-32279250)
chr4 (255-315)||(49181190-49181250)
[»] chr3 (10 HSPs)
chr3 (265-326)||(12515463-12515524)
chr3 (255-315)||(10307884-10307944)
chr3 (255-314)||(1569191-1569250)
chr3 (265-315)||(2571396-2571446)
chr3 (268-321)||(40930182-40930235)
chr3 (252-320)||(2566597-2566665)
chr3 (257-314)||(37055367-37055424)
chr3 (269-314)||(42180184-42180229)
chr3 (264-316)||(15862901-15862953)
chr3 (255-315)||(50204521-50204581)
[»] scaffold0111 (1 HSPs)
scaffold0111 (252-316)||(41097-41161)
[»] chr6 (10 HSPs)
chr6 (259-315)||(29863302-29863358)
chr6 (265-315)||(14228126-14228176)
chr6 (265-315)||(17552587-17552637)
chr6 (265-315)||(28943769-28943819)
chr6 (255-314)||(8977467-8977526)
chr6 (269-315)||(2830681-2830727)
chr6 (265-315)||(3853071-3853121)
chr6 (265-315)||(31169763-31169813)
chr6 (270-315)||(27819627-27819672)
chr6 (255-315)||(34692472-34692532)
[»] chr2 (13 HSPs)
chr2 (265-315)||(24729577-24729627)
chr2 (265-315)||(38248420-38248470)
chr2 (259-315)||(36731302-36731358)
chr2 (257-316)||(23932685-23932744)
chr2 (250-313)||(26003348-26003411)
chr2 (265-315)||(5583558-5583608)
chr2 (265-315)||(7757786-7757836)
chr2 (265-315)||(17265532-17265582)
chr2 (265-315)||(29157829-29157879)
chr2 (268-325)||(8065254-8065311)
chr2 (265-314)||(34213950-34213999)
chr2 (256-328)||(6765119-6765191)
chr2 (250-298)||(17234955-17235003)
[»] scaffold0018 (1 HSPs)
scaffold0018 (266-315)||(182171-182220)
[»] scaffold0229 (1 HSPs)
scaffold0229 (250-316)||(24526-24592)
[»] scaffold0011 (1 HSPs)
scaffold0011 (265-315)||(13213-13263)
[»] scaffold0618 (1 HSPs)
scaffold0618 (265-313)||(8416-8464)
[»] scaffold0149 (1 HSPs)
scaffold0149 (270-314)||(22597-22641)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 2341419 - 2341660
Alignment:
Q  1 ttaatttttaaactatatgatgatcgaaaccgtgttcgagtctaacaccgatacattaggttacattctatcgatgcacaaacacggcaacatttataat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2341419 ttaatttttaaactatatgatgattgaaaccgtgttcgagtctaacaccgatacattaggttacattctatcgatgcacaaacacggcaacatttataat 2341518  T
Q  101 aatttggataaatgcaattgttgaatgtaactttatatgttggtctagtgttagtattgaacacatgtcagacactaaatatatctcaaatatgaaatgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  2341519 aatttggataaatgcaattgttgaatgtaactttatatgttggtatagtgttggtattgaacacatgtcagacactaaatatatctcaaatatgaagtgt 2341618  T
Q  201 ctgaaaatcaaaattacattcgattatctatatttatataaa 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2341619 ctgaaaatcaaaattacattcgattatctatatttatataaa 2341660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 234 - 341
Target Start/End: Original strand, 2341846 - 2341953
Alignment:
Q  234 ttatataaaacccaccaatttcaatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaactttttaaatattatcagt 333  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||     
T  2341846 ttatataaaatccaccaatttcaatacaattttactattttaaattttttaacatgtgcaaatttatacatgatagaaaaactttttaaatattatcagc 2341945  T
Q  334 ctcttcat 341  Q
    ||||||||    
T  2341946 ctcttcat 2341953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 33072109 - 33072159
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  33072109 ttactattttaaatttcttaacatgtacaaatttgcacatgatagaaaaac 33072159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 25709459 - 25709394
Alignment:
Q  255 caatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaacttttt 320  Q
    ||||||||  ||||||||||||| ||| |||||||| |||||||  ||||||||||||||||||||    
T  25709459 caatacaaagttactattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacttttt 25709394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 33343106 - 33343166
Alignment:
Q  255 caatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||  ||||||||||||||||| |||||||| |||||||  |||||||||||||||    
T  33343106 caatacaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 33343166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 34270389 - 34270439
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||| |||||||| |||||||  |||||||||||||||    
T  34270389 ttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 34270439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 46290138 - 46290188
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||| |||||||| |||||||  |||||||||||||||    
T  46290138 ttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 46290188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 22334071 - 22334015
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaacttttta 321  Q
    |||||| |||||| ||| ||||||||||||||||  ||||||| |||||||||||||    
T  22334071 ttactactttaaacttcttaacatgtacaaatttgcacatgattgaaaaacttttta 22334015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 29692587 - 29692539
Alignment:
Q  268 ctattttaaatttcataacatgtacaaatttatacatgatagaaaaact 316  Q
    |||||||||| ||| ||||||||||||||||  ||||||||||||||||    
T  29692587 ctattttaaacttcttaacatgtacaaatttgcacatgatagaaaaact 29692539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 26050517 - 26050462
Alignment:
Q  259 acaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaa 314  Q
    |||| ||||| |||||||||||| |||||||| |||||||  ||||||||||||||    
T  26050517 acaaatttaccattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaa 26050462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 26059876 - 26059821
Alignment:
Q  259 acaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaa 314  Q
    |||| ||||| |||||||||||| |||||||| |||||||  ||||||||||||||    
T  26059876 acaaatttaccattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaa 26059821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 8420883 - 8420833
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    |||| |||||||||||  |||||||||||||||| | ||||||||||||||    
T  8420883 ttaccattttaaattttttaacatgtacaaatttgttcatgatagaaaaac 8420833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 39757160 - 39757110
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||| ||| |||||||| |||||||  |||||||||||||||    
T  39757160 ttactattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 39757110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 29398194 - 29398133
Alignment:
Q  255 caatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaact 316  Q
    ||||||||  || |||||||||| ||| |||||||| |||||||  ||||||||||||||||    
T  29398194 caatacaaaatttctattttaaacttcttaacatgtgcaaatttgaacatgatagaaaaact 29398133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 4969891 - 4969951
Alignment:
Q  255 caatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||  || |||||||||| ||| |||||||| |||||||  |||||||||||||||    
T  4969891 caatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 4969951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 26300686 - 26300750
Alignment:
Q  252 tttcaatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaact 316  Q
    ||||||| |||  ||||||||||||| ||  |||||||| ||||||| |||||||| ||||||||    
T  26300686 tttcaattcaaagttactattttaaactttttaacatgtgcaaatttgtacatgatggaaaaact 26300750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 6818137 - 6818195
Alignment:
Q  257 atacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||||||| ||| ||||||||||||||||  |||||||||||||||    
T  6818137 atacaattttactattttaaacttcttaacatgtacaaatttgcacatgatagaaaaac 6818195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 3306118 - 3306055
Alignment:
Q  252 tttcaatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||| |||  ||||||||||||||||| |||||||| |||||||  |||||||||||||||    
T  3306118 tttcaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 3306055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 2161515 - 2161565
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||| |||||||| |||||||  |||||||||||||||    
T  2161515 ttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 2161565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 324
Target Start/End: Original strand, 26682196 - 26682255
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaactttttaaat 324  Q
    |||||| |||||||||| |||||||| |||||||  |||||||||||||||  |||||||    
T  26682196 ttactactttaaatttcttaacatgtgcaaatttgcacatgatagaaaaaccctttaaat 26682255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 5573418 - 5573464
Alignment:
Q  269 tattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||| ||| ||||||||||||||||  |||||||||||||||    
T  5573418 tattttaaacttcttaacatgtacaaatttgcacatgatagaaaaac 5573464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 26364040 - 26363990
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||| |||||||  |||||||  |||||||||||||||    
T  26364040 ttactattttaaatttcttaacatgcgcaaatttgcacatgatagaaaaac 26363990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 13496757 - 13496709
Alignment:
Q  267 actattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||| ||| |||||||| |||||||  |||||||||||||||    
T  13496757 actattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 13496709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 14961723 - 14961663
Alignment:
Q  255 caatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||  ||||||||||||| ||| || ||||| |||||||  |||||||||||||||    
T  14961723 caatacaaaattactattttaaacttcttagcatgtgcaaatttgcacatgatagaaaaac 14961663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 22838357 - 22838409
Alignment:
Q  269 tattttaaatttcataacatgtacaaatttatacatgatagaaaaacttttta 321  Q
    ||||||||| ||| |||||||| |||||||  ||||||||||||||| |||||    
T  22838357 tattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacatttta 22838409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 28014918 - 28014858
Alignment:
Q  255 caatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||  || |||||||||| ||| |||||||| |||||||  |||||||||||||||    
T  28014918 caatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 28014858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 38212991 - 38212943
Alignment:
Q  268 ctattttaaatttcataacatgtacaaatttatacatgatagaaaaact 316  Q
    |||||||||| ||| |||||||| |||||||  ||||||||||||||||    
T  38212991 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaact 38212943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 44091446 - 44091494
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaa 313  Q
    |||||| |||||||||| |||||| | |||||||| |||||||||||||    
T  44091446 ttactactttaaatttcttaacatatgcaaatttacacatgatagaaaa 44091494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 29635811 - 29635747
Alignment:
Q  252 tttcaatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaact 316  Q
    |||||||| ||  ||||||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  29635811 tttcaatataaagttactattttaaattttttaacatgtacaaatttataaatgatagaaaaact 29635747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 47355438 - 47355373
Alignment:
Q  255 caatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaacttttt 320  Q
    |||||||| |||| ||||||||||||| ||||||||  |||||||||| |||||||||||| ||||    
T  47355438 caatacaaatttattattttaaatttcttaacatgtgtaaatttatacgtgatagaaaaacatttt 47355373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 23576477 - 23576414
Alignment:
Q  252 tttcaatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||| |||  ||||||||||||||||| |||||||| |||||||  |||||||||||||||    
T  23576477 tttcaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 23576414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 1502770 - 1502720
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||| |||||||| |||||||  |||||||||||||||    
T  1502770 ttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 1502720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 9516709 - 9516758
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaa 314  Q
    |||| |||||||||||| |||||||| |||||||| ||||||||||||||    
T  9516709 ttaccattttaaatttcttaacatgtgcaaatttacacatgatagaaaaa 9516758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 1366160 - 1366226
Alignment:
Q  250 aatttcaatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaact 316  Q
    |||| ||||||||  ||||||||||||||||| | ||||||  ||||||  ||||||||||||||||    
T  1366160 aattccaatacaaaattactattttaaatttctttacatgtgtaaatttgcacatgatagaaaaact 1366226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 10896481 - 10896538
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaactttttaa 322  Q
    |||||| |||||| ||| |||||||| ||| |||| ||||||||||||||| ||||||    
T  10896481 ttactactttaaacttcttaacatgtgcaattttacacatgatagaaaaaccttttaa 10896538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 13241885 - 13241934
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaa 314  Q
    |||| |||||||||||| |||||||| |||||||  ||||||||||||||    
T  13241885 ttaccattttaaatttcttaacatgtgcaaattttcacatgatagaaaaa 13241934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 35438843 - 35438892
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaa 314  Q
    |||| |||||||||||| |||||||| |||||||  ||||||||||||||    
T  35438843 ttaccattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaa 35438892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 19066644 - 19066676
Alignment:
Q  283 taacatgtacaaatttatacatgatagaaaaac 315  Q
    |||||||| ||||||||||||||||||||||||    
T  19066644 taacatgtgcaaatttatacatgatagaaaaac 19066676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 19114534 - 19114566
Alignment:
Q  283 taacatgtacaaatttatacatgatagaaaaac 315  Q
    |||||||| ||||||||||||||||||||||||    
T  19114534 taacatgtgcaaatttatacatgatagaaaaac 19114566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 25465276 - 25465336
Alignment:
Q  255 caatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    |||| ||| ||||||||||| || ||| |||||||| |||||||  |||||||||||||||    
T  25465276 caatgcaaatttactattttgaacttcttaacatgtgcaaatttgcacatgatagaaaaac 25465336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 51920478 - 51920430
Alignment:
Q  268 ctattttaaatttcataacatgtacaaatttatacatgatagaaaaact 316  Q
    |||||||||||||  |||||||| |||||||  ||||||||||||||||    
T  51920478 ctattttaaatttattaacatgtgcaaatttgcacatgatagaaaaact 51920430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 320
Target Start/End: Complemental strand, 15241015 - 15240945
Alignment:
Q  250 aatttcaatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaacttttt 320  Q
    ||||||||||||| |||| |||||| || ||  ||||||||||||||||  ||||||||||||||||||||    
T  15241015 aatttcaatacaaatttaatattttgaactttttaacatgtacaaatttgcacatgatagaaaaacttttt 15240945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 15820339 - 15820403
Alignment:
Q  250 aatttcaatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaa 314  Q
    ||||||||||||| ||||||||||| |||||| | ||||||  ||||||| ||||||||||||||    
T  15820339 aatttcaatacaaatttactattttgaatttcttgacatgtgtaaatttaaacatgatagaaaaa 15820403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 35469682 - 35469733
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaact 316  Q
    ||||||||||||||||  |||||||| |||||||| ||||||||||||||||    
T  35469682 ttactattttaaattttttaacatgtgcaaatttacacatgatagaaaaact 35469733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 30839909 - 30839959
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||| |||||||| |||||||  |||||||||||||||    
T  30839909 ttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 30839959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 36597707 - 36597757
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||| |||||||| |||||||  |||||||||||||||    
T  36597707 ttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 36597757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 31366000 - 31365944
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaacttttta 321  Q
    |||||| |||||| ||| ||||||||||||||||  |||||||||||||||| ||||    
T  31366000 ttactaatttaaacttcttaacatgtacaaatttgcacatgatagaaaaactcttta 31365944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 23995479 - 23995416
Alignment:
Q  252 tttcaatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    |||||||| ||  ||||||||||||| ||| ||||||||||||||||  |||| ||||||||||    
T  23995479 tttcaatataaaattactattttaaacttcttaacatgtacaaatttgcacataatagaaaaac 23995416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 32020034 - 32019983
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaact 316  Q
    |||| |||||||||||| |||||||| |||||||  ||||||||||||||||    
T  32020034 ttaccattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaact 32019983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 40513079 - 40513126
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaa 312  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||||    
T  40513079 ttactattttaaattttttaacatgtgcaaatttgtacatgatagaaa 40513126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 6863684 - 6863734
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||  |||||||| |||||||  |||||||||||||||    
T  6863684 ttactattttaaattttttaacatgtgcaaatttgcacatgatagaaaaac 6863734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 15191001 - 15191050
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaa 314  Q
    |||||| |||||| ||| |||||||| ||||||||||||||||| |||||    
T  15191001 ttactactttaaacttcttaacatgtgcaaatttatacatgataaaaaaa 15191050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 3398338 - 3398398
Alignment:
Q  255 caatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||  || |||||||||| ||| |||||||| |||||||  |||||||||||||||    
T  3398338 caatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 3398398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 30893757 - 30893805
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaa 313  Q
    ||||||||||||| ||| |||||||| |||||||  |||||||||||||    
T  30893757 ttactattttaaacttcttaacatgtgcaaatttgcacatgatagaaaa 30893805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 9759192 - 9759142
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||| |||||||| ||||||| ||||||||||||||||    
T  9759192 ttactattttaaatttcttaacatgtgcaaatttgtacatgatagaaaaac 9759142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 39876958 - 39877008
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||| |||||||| |||||||| |||||||||||||||    
T  39876958 ttactattttaaatttcttaacatgtgcaaatttacacatgatagaaaaac 39877008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 51691469 - 51691519
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||| ||||||| |||||||| |||||||| |||||||||||||||    
T  51691469 ttactatttaaaatttcttaacatgtgcaaatttacacatgatagaaaaac 51691519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 52391416 - 52391475
Alignment:
Q  255 caatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaa 314  Q
    ||||||||  || |||||||||| ||| |||||||| |||||||| ||||||||||||||    
T  52391416 caatacaaaatttctattttaaacttcttaacatgtgcaaatttacacatgatagaaaaa 52391475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 7349816 - 7349866
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    |||||| |||||| ||| || |||||||||||||| |||||||||||||||    
T  7349816 ttactactttaaacttcttatcatgtacaaatttacacatgatagaaaaac 7349866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 40049686 - 40049736
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||| |||||||| |||||||  |||| ||||||||||    
T  40049686 ttactattttaaatttcttaacatgtgcaaatttgcacataatagaaaaac 40049736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 50352430 - 50352480
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||| |||||||| |||||||  | |||||||||||||    
T  50352430 ttactattttaaatttcttaacatgtgcaaatttgcatatgatagaaaaac 50352480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 18882327 - 18882267
Alignment:
Q  255 caatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||  || |||||||||| ||| |||||||| |||||||  |||||||||||||||    
T  18882327 caatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 18882267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 25840971 - 25840939
Alignment:
Q  283 taacatgtacaaatttatacatgatagaaaaac 315  Q
    |||||||||||||||||||||| ||||||||||    
T  25840971 taacatgtacaaatttatacattatagaaaaac 25840939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 32279198 - 32279250
Alignment:
Q  264 tttactattttaaatttcataacatgtacaaatttatacatgatagaaaaact 316  Q
    |||||||||||||| ||  |||||||| |||||||| |||||||| |||||||    
T  32279198 tttactattttaaactttttaacatgtgcaaatttacacatgataaaaaaact 32279250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 49181190 - 49181250
Alignment:
Q  255 caatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    |||||||| ||||||||||| || ||| ||||| || |||||||  |||||||||||||||    
T  49181190 caatacaaatttactattttgaacttcttaacaggtgcaaatttgcacatgatagaaaaac 49181250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 326
Target Start/End: Complemental strand, 12515524 - 12515463
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaactttttaaatat 326  Q
    ||||||||||||||||  |||||||| |||||||| |||||||||||||||  |||||||||    
T  12515524 ttactattttaaattttttaacatgtgcaaatttacacatgatagaaaaaccctttaaatat 12515463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 10307884 - 10307944
Alignment:
Q  255 caatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    |||| ||| |||||||||||||||||| |||||||| |||||||  |||||||||||||||    
T  10307884 caatgcaaatttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 10307944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 1569250 - 1569191
Alignment:
Q  255 caatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaa 314  Q
    ||||||||  ||| ||||||||| ||| |||||||||| |||||||||||||||||||||    
T  1569250 caatacaaagttattattttaaacttcttaacatgtacgaatttatacatgatagaaaaa 1569191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 2571396 - 2571446
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||| |||||||| |||||||  |||||||||||||||    
T  2571396 ttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 2571446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 40930182 - 40930235
Alignment:
Q  268 ctattttaaatttcataacatgtacaaatttatacatgatagaaaaacttttta 321  Q
    |||||||||| ||| |||||||| |||||||  |||||||||||||||||||||    
T  40930182 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacttttta 40930235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 320
Target Start/End: Original strand, 2566597 - 2566665
Alignment:
Q  252 tttcaatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaacttttt 320  Q
    |||||||||||  ||||||||||||||||  ||||||||  ||||||  ||||||||||||||| ||||    
T  2566597 tttcaatacaaaattactattttaaattttctaacatgtgtaaatttgcacatgatagaaaaacctttt 2566665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 37055424 - 37055367
Alignment:
Q  257 atacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaa 314  Q
    |||||| |||||||||||||| ||| ||| |||| |||||||  ||||||||||||||    
T  37055424 atacaactttactattttaaacttcttaatatgtgcaaattttcacatgatagaaaaa 37055367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 42180184 - 42180229
Alignment:
Q  269 tattttaaatttcataacatgtacaaatttatacatgatagaaaaa 314  Q
    ||||||||| ||| |||||||| |||||||| ||||||||||||||    
T  42180184 tattttaaacttcttaacatgtgcaaatttacacatgatagaaaaa 42180229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 15862953 - 15862901
Alignment:
Q  264 tttactattttaaatttcataacatgtacaaatttatacatgatagaaaaact 316  Q
    |||||||||||||| | | |||||||| | |||||| ||||||||||||||||    
T  15862953 tttactattttaaactccttaacatgtgcgaatttacacatgatagaaaaact 15862901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 50204521 - 50204581
Alignment:
Q  255 caatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||  || |||||||||| ||| |||||||| |||||||  |||||||||||||||    
T  50204521 caatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 50204581  T

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Target: scaffold0111 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 41097 - 41161
Alignment:
Q  252 tttcaatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaact 316  Q
    |||||||||||  ||| ||||||||| ||| |||||| |||||||||| ||||||||||||||||    
T  41097 tttcaatacaaaattattattttaaacttcttaacatatacaaatttacacatgatagaaaaact 41161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 29863358 - 29863302
Alignment:
Q  259 acaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||||| ||| |||||||| |||||||  |||||||||||||||    
T  29863358 acaattttactattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 29863302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 14228176 - 14228126
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||| |||||||| |||||||  |||||||||||||||    
T  14228176 ttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 14228126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 17552637 - 17552587
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||| |||||||| |||||||  |||||||||||||||    
T  17552637 ttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 17552587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 28943819 - 28943769
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||| |||||||| |||||||  |||||||||||||||    
T  28943819 ttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 28943769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 8977526 - 8977467
Alignment:
Q  255 caatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaa 314  Q
    |||||||| ||||||||||| || ||| ||||| || |||||||| ||||||||||||||    
T  8977526 caatacaaatttactattttgaacttcttaacaagtgcaaatttacacatgatagaaaaa 8977467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 2830727 - 2830681
Alignment:
Q  269 tattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||| ||| |||||||| ||||||| ||||||||||||||||    
T  2830727 tattttaaacttcttaacatgtgcaaatttgtacatgatagaaaaac 2830681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 3853071 - 3853121
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    |||||| |||||||||| |||||||| |||||||  |||||||||||||||    
T  3853071 ttactactttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 3853121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 31169813 - 31169763
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    |||||| |||||||||  |||||||| |||||||| |||||||||||||||    
T  31169813 ttactactttaaatttgttaacatgtgcaaatttacacatgatagaaaaac 31169763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 27819672 - 27819627
Alignment:
Q  270 attttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    |||||||| ||| |||||||| ||||||| ||||||||||||||||    
T  27819672 attttaaacttcttaacatgtgcaaatttgtacatgatagaaaaac 27819627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 34692472 - 34692532
Alignment:
Q  255 caatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||  || |||||||||| ||| |||||||| |||||||  |||||||||||||||    
T  34692472 caatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 34692532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 24729627 - 24729577
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||| |||||||| |||||||  |||||||||||||||    
T  24729627 ttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 24729577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 38248470 - 38248420
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||| |||||||| |||||||  |||||||||||||||    
T  38248470 ttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 38248420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 36731302 - 36731358
Alignment:
Q  259 acaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    |||| ||||| |||||||||||| ||||||||  ||||||| |||||||||||||||    
T  36731302 acaaatttaccattttaaatttcttaacatgtgtaaatttacacatgatagaaaaac 36731358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 316
Target Start/End: Original strand, 23932685 - 23932744
Alignment:
Q  257 atacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaact 316  Q
    ||||||||||||||||||||| ||| ||| || | |||||||  ||||||||||||||||    
T  23932685 atacaattttactattttaaacttcttaatatatgcaaatttgcacatgatagaaaaact 23932744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 313
Target Start/End: Complemental strand, 26003411 - 26003348
Alignment:
Q  250 aatttcaatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaa 313  Q
    |||||||||||||  || |||||||||| ||| |||||||| |||||||  |||||||||||||    
T  26003411 aatttcaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaa 26003348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 5583608 - 5583558
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||| |||||||| |||||||   ||||||||||||||    
T  5583608 ttactattttaaatttcttaacatgtgcaaatttgcgcatgatagaaaaac 5583558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 7757836 - 7757786
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||| ||||||||  ||||||  |||||||||||||||    
T  7757836 ttactattttaaatttcttaacatgtgtaaatttgcacatgatagaaaaac 7757786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 17265532 - 17265582
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||||||| ||||| || |||||||  |||||||||||||||    
T  17265532 ttactattttaaatttcttaacaagtgcaaatttggacatgatagaaaaac 17265582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 29157879 - 29157829
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||| ||||||| |||||||| |||||||  |||||||||||||||    
T  29157879 ttactatttaaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 29157829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 8065254 - 8065311
Alignment:
Q  268 ctattttaaatttcataacatgtacaaatttatacatgatagaaaaactttttaaata 325  Q
    |||||||||| ||| |||||||| |||||||  |||||||||||||||  ||||||||    
T  8065254 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccctttaaata 8065311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 34213999 - 34213950
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaa 314  Q
    ||||||||||||||||| |||||||| |||||||  ||| ||||||||||    
T  34213999 ttactattttaaatttcttaacatgtgcaaatttgcacacgatagaaaaa 34213950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 328
Target Start/End: Original strand, 6765119 - 6765191
Alignment:
Q  256 aatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaactttttaaatatta 328  Q
    ||||||| |||| | ||||||| ||| |||||||| ||||| || |||||||||||||| | |||||| ||||    
T  6765119 aatacaaatttatttttttaaacttcttaacatgtgcaaatctacacatgatagaaaaattctttaaaaatta 6765191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 17235003 - 17234955
Alignment:
Q  250 aatttcaatacaattttactattttaaatttcataacatgtacaaattt 298  Q
    |||| ||||||||  ||||||||||||||||| |||||||| |||||||    
T  17235003 aattccaatacaaaattactattttaaatttcttaacatgtgcaaattt 17234955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 182171 - 182220
Alignment:
Q  266 tactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||| |||||| ||| ||||||||||||||||| |||||||||||||||    
T  182171 tactactttaaacttcttaacatgtacaaatttacacatgatagaaaaac 182220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 24592 - 24526
Alignment:
Q  250 aatttcaatacaattttactattttaaatttcataacatgtacaaatttatacatgatagaaaaact 316  Q
    |||| ||||||||  ||||||||||||||||| | ||||||  ||||||  ||||||||||||||||    
T  24592 aattccaatacaaaattactattttaaatttctttacatgtgtaaatttgcacatgatagaaaaact 24526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 13213 - 13263
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaaac 315  Q
    ||||||||||||| ||| |||||||| |||||||  |||||||||||||||    
T  13213 ttactattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 13263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 8464 - 8416
Alignment:
Q  265 ttactattttaaatttcataacatgtacaaatttatacatgatagaaaa 313  Q
    |||||| |||||||||| |||||| | |||||||| |||||||||||||    
T  8464 ttactactttaaatttcttaacatatgcaaatttacacatgatagaaaa 8416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 22597 - 22641
Alignment:
Q  270 attttaaatttcataacatgtacaaatttatacatgatagaaaaa 314  Q
    |||||||||||| |||||||| ||||||| ||||| |||||||||    
T  22597 attttaaatttcttaacatgtgcaaatttgtacataatagaaaaa 22641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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