View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18363_low_8 (Length: 324)
Name: NF18363_low_8
Description: NF18363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18363_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 32055673 - 32055997
Alignment:
| Q |
1 |
aaaataggaagcatatcaaagccacatctccttgcgtgaaatattatttcagtgcctaaaccctctacaggtcagtaatgcctttatattttgtgtgact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
32055673 |
aaaataggaagcatatcaaagccacatctccttgcgtgaaatattatttcagtgcctaaaccctctacaggtcagtaatgcctctatattttgtgcgact |
32055772 |
T |
|
| Q |
101 |
atcaataaccagacccgttctcga-ggggtgcaaacagttcaatcgaattggaccatcaataacaatacccaccccataatcaaagggaaaaaacatgct |
199 |
Q |
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||||||||||||| ||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32055773 |
atcaataaccagatccgttcttgagggggtgcaaacagttcaaccgaattggaccatcaataacaatacccaccccacaatcaaagggaaaaaacatgct |
32055872 |
T |
|
| Q |
200 |
cttgcttcttctttcctccaacaaccacgctgct--ttctttttctacacctctcccatgttccaccccgacctccctcttgcagccgctcgcctccaca |
297 |
Q |
| |
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|||| |||||||||||||||||||| || ||||| || ||||||| ||||||| ||||||||| |||||||||| |||||||||||| |||||||||| |
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| T |
32055873 |
cttgtttcttctttcctccaacaacaacactgcttctttcttttctaaacctctctcatgttccatcccgacctccatcttgcagccgcgcgcctccaca |
32055972 |
T |
|
| Q |
298 |
caccggtaaccaccacctattcaac |
322 |
Q |
| |
|
||| ||||||||||||||||||||| |
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| T |
32055973 |
cacgggtaaccaccacctattcaac |
32055997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 8086361 - 8086464
Alignment:
| Q |
5 |
taggaagcatatcaaagccacatctccttgcgtgaaatattatttcagtgcctaaaccctctacaggtcagtaatgcctttatattttgtgtgactatca |
104 |
Q |
| |
|
|||| |||||||||| | ||||||||||||| || ||||||||| || ||||||| |||||||| ||||| | | ||||||||||||||||| | |||| |
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| T |
8086361 |
tagggagcatatcaacgtcacatctccttgcttggaatattattacaacgcctaaatcctctacatgtcagcatttcctttatattttgtgtgcccatca |
8086460 |
T |
|
| Q |
105 |
ataa |
108 |
Q |
| |
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|||| |
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|
| T |
8086461 |
ataa |
8086464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 30332820 - 30332735
Alignment:
| Q |
13 |
atatcaaagccacatctccttgcgtgaaatattatttcagtgcctaaaccctctacaggtcagtaatgcctttatattttgtgtga |
98 |
Q |
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|
|||||||||||| ||||| |||| |||||||| ||| |||| ||||| ||| |||| || || | ||||||| |||||||||||| |
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| T |
30332820 |
atatcaaagccatatctcgttgcttgaaatatcattagagtgtctaaatcctttacatgtgagcattgcctttttattttgtgtga |
30332735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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