View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18364_high_17 (Length: 371)

Name: NF18364_high_17
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18364_high_17
NF18364_high_17
[»] chr8 (3 HSPs)
chr8 (131-322)||(4219856-4220048)
chr8 (25-92)||(4219678-4219745)
chr8 (105-139)||(4219745-4219779)
[»] chr1 (1 HSPs)
chr1 (231-274)||(5388858-5388903)
[»] chr2 (1 HSPs)
chr2 (207-280)||(13563720-13563796)


Alignment Details
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 131 - 322
Target Start/End: Original strand, 4219856 - 4220048
Alignment:
Q  131 taataaactttaaactacaatcataaaagaaaacacacgtagtaaatatttgatgctgtattgaattcccacacgttttcaatttt-tgaaaataatttt 229  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||  ||||||||||| |||||||||||||    
T  4219856 taatcaaccttaaactacaatcataaaaggaaacacacgtagtaaatatttgatgttgtattgaattccaacatattttcaattttttgaaaataatttt 4219955  T
Q  230 cctcacgcaaaatcaaatttaattcattcacttcatttaaggaaaaaagtaccaatattctcattgatcatatactatatatgacaaaaatca 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  4219956 cctcacgcaaaatcaaatttaattcattcacttcatttaaggaaaatagtactaatattctcattgatcatatactatatatgacaaaaatca 4220048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 4219678 - 4219745
Alignment:
Q  25 ttcacatgactacactactaccttaggaagaaaattataattcaaccaccacaacaaaccactatgtc 92  Q
    |||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  4219678 ttcacatgactacagtactatattaggaagaaaattataattcaaccaccacaacaaaccactatgtc 4219745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 4219745 - 4219779
Alignment:
Q  105 ccatttattccttctatctaattaattaataaact 139  Q
    ||||||||||||||||||||||||||||| |||||    
T  4219745 ccatttattccttctatctaattaattaacaaact 4219779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 5388858 - 5388903
Alignment:
Q  231 ctcacgcaaaatcaaatttaattcattcact--tcatttaaggaaa 274  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||    
T  5388858 ctcacgcaaaaccaaatttaattcattcacttctcatttaaggaaa 5388903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 280
Target Start/End: Original strand, 13563720 - 13563796
Alignment:
Q  207 tttcaatttt-tgaaaataattttcctcacgcaaaatcaaatttaattcattcactt--catttaaggaaaaaagta 280  Q
    |||||||||| | |||||||| |||||||||||||  ||| |||||| |||||||||  ||||||||||||| ||||    
T  13563720 tttcaattttgtaaaaataatattcctcacgcaaacccaactttaatccattcacttcacatttaaggaaaacagta 13563796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University