View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18364_high_19 (Length: 368)

Name: NF18364_high_19
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18364_high_19
NF18364_high_19
[»] chr5 (5 HSPs)
chr5 (20-161)||(17811789-17811930)
chr5 (134-293)||(16696472-16696631)
chr5 (20-113)||(32754691-32754784)
chr5 (237-292)||(17825028-17825083)
chr5 (305-351)||(29909560-29909606)
[»] chr3 (1 HSPs)
chr3 (20-129)||(46027690-46027799)
[»] chr6 (1 HSPs)
chr6 (20-124)||(719655-719759)
[»] chr4 (3 HSPs)
chr4 (20-124)||(34852154-34852258)
chr4 (305-348)||(5846344-5846387)
chr4 (306-351)||(11103969-11104014)
[»] chr1 (2 HSPs)
chr1 (50-129)||(15853941-15854020)
chr1 (20-104)||(32828605-32828689)
[»] scaffold0024 (1 HSPs)
scaffold0024 (20-92)||(61903-61975)
[»] chr7 (1 HSPs)
chr7 (308-351)||(26029034-26029077)
[»] chr2 (2 HSPs)
chr2 (305-348)||(2324439-2324482)
chr2 (307-351)||(13486300-13486344)
[»] chr8 (1 HSPs)
chr8 (305-348)||(4828257-4828301)


Alignment Details
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 17811930 - 17811789
Alignment:
Q  20 tctacatctggacggaacaagaagggagggcggcgtgattgggctttagaaagatgagctggatacggcggcgagagaacaaagaggaaggagagcgttt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||    
T  17811930 tctacatctggacggaacaagaagggagggcggcgtgattgggctttagagagatgagctggatacggcggcgagagaacatagaggaaggagagccttt 17811831  T
Q  120 gtgttgtgttgtcacttggaaaaatacttccctcgggctcta 161  Q
    | |||||||| |||||||||||||||||||||||||||||||    
T  17811830 gggttgtgttatcacttggaaaaatacttccctcgggctcta 17811789  T

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Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 134 - 293
Target Start/End: Original strand, 16696472 - 16696631
Alignment:
Q  134 cttggaaaaatacttccctcgggctctacataggcataaactttagtaccaacaaagtaaaacacaatagcagtgcacataaacaaacatggcaaggcaa 233  Q
    |||| ||| ||||||||||| ||||| ||||| ||||||||||||| |||| ||||||||||||| ||||||  |  |||||||||||||||||| ||||    
T  16696472 cttgaaaatatacttccctcaggctcaacatatgcataaactttagcaccagcaaagtaaaacacgatagcaacgaccataaacaaacatggcaaagcaa 16696571  T
Q  234 aaccaagagtccaactaaaagagtcttggattttaaccactaaagtcacattgattaaaa 293  Q
    |||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  16696572 aaccaagagtccaactaaaagagtcttggattttaaccacgagtgtcacattgattaaaa 16696631  T

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Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 32754691 - 32754784
Alignment:
Q  20 tctacatctggacggaacaagaagggagggcggcgtgattgggctttagaaagatgagctggatacggcggcgagagaacaaagaggaaggaga 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| | ||||||||||||    
T  32754691 tctacatctggacggaacaagaagggagggcggcgtgattgggctttagagagatgagctggatacggaggcgagagaagagagaggaaggaga 32754784  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 17825083 - 17825028
Alignment:
Q  237 caagagtccaactaaaagagtcttggattttaaccactaaagtcacattgattaaa 292  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  17825083 caagagtcgaactaaaagagtcttggattttaaccactaaagtcaccttgattaaa 17825028  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 29909606 - 29909560
Alignment:
Q  305 tgtgttaaaagtcctacatcggttagaagttggcatgacaatttatt 351  Q
    |||||||| ||||| ||||||||||| ||||||| ||||||||||||    
T  29909606 tgtgttaagagtccgacatcggttaggagttggcctgacaatttatt 29909560  T

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Target: chr3 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 46027799 - 46027690
Alignment:
Q  20 tctacatctggacggaacaagaagggagggcggcgtgattgggctttagaaagatgagctggatacggcggcgagagaacaaagaggaaggagagcgttt 119  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  46027799 tctacatctagacggaacaagaagggagggcggcatgattgggctttagaaagatgagctggatacggcggcgagagaacggagaggaaggagagcgttt 46027700  T
Q  120 gtgttgtgtt 129  Q
    ||||||||||    
T  46027699 gtgttgtgtt 46027690  T

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Target: chr6 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 719759 - 719655
Alignment:
Q  20 tctacatctggacggaacaagaagggagggcggcgtgattgggctttagaaagatgagctggatacggcggcgagagaacaaagaggaaggagagcgttt 119  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  719759 tctacatctggacggaacaagaagggagggcaacgtgattgggctttagagagatgagctggatacggcggcgagagaacagagaggaaggagagcgttt 719660  T
Q  120 gtgtt 124  Q
    |||||    
T  719659 gtgtt 719655  T

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Target: chr4 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 34852154 - 34852258
Alignment:
Q  20 tctacatctggacggaacaagaagggagggcggcgtgattgggctttagaaagatgagctggatacggcggcgagagaacaaagaggaaggagagcgttt 119  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  34852154 tctacatctggacggaacaagaagggagggcgacgtgattgggctttagagagatgagctggatacggcgtcgagagaacagagaggaaggagagcgttt 34852253  T
Q  120 gtgtt 124  Q
    |||||    
T  34852254 gtgtt 34852258  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 348
Target Start/End: Original strand, 5846344 - 5846387
Alignment:
Q  305 tgtgttaaaagtcctacatcggttagaagttggcatgacaattt 348  Q
    |||||||| ||||| ||||||||||| |||||||||||||||||    
T  5846344 tgtgttaagagtcccacatcggttaggagttggcatgacaattt 5846387  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 11104014 - 11103969
Alignment:
Q  306 gtgttaaaagtcctacatcggttagaagttggcatgacaatttatt 351  Q
    ||||||| ||||| ||||||||||| ||||||| ||||||||||||    
T  11104014 gtgttaagagtcccacatcggttaggagttggcctgacaatttatt 11103969  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 15853941 - 15854020
Alignment:
Q  50 cggcgtgattgggctttagaaagatgagctggatacggcggcgagagaacaaagaggaaggagagcgtttgtgttgtgtt 129  Q
    ||||||||||||| |||||| |||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||    
T  15853941 cggcgtgattgggatttagagagatgagctggatacgacggcgagagaacagagaggaaggagagtgtttgtgttgtgtt 15854020  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 32828689 - 32828605
Alignment:
Q  20 tctacatctggacggaacaagaagggagggcggcgtgattgggctttagaaagatgagctggatacggcggcgagagaacaaaga 104  Q
    |||||||||||||  |||||||| ||||||  ||  ||||||||||| || ||||||| || |||||||||||||||||||||||    
T  32828689 tctacatctggacaaaacaagaaaggagggtagcaggattgggctttggagagatgagttgaatacggcggcgagagaacaaaga 32828605  T

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Target: scaffold0024 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 61975 - 61903
Alignment:
Q  20 tctacatctggacggaacaagaagggagggcggcgtgattgggctttagaaagatgagctggatacggcggcg 92  Q
    ||||||| || ||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  61975 tctacatttgaacggagcaagaagggagggcggcgtgattgggcttaagagagatgagttggatacggcggcg 61903  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 351
Target Start/End: Complemental strand, 26029077 - 26029034
Alignment:
Q  308 gttaaaagtcctacatcggttagaagttggcatgacaatttatt 351  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||||    
T  26029077 gttaagagtcctacatcggttaggagttggcctgacaatttatt 26029034  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 348
Target Start/End: Original strand, 2324439 - 2324482
Alignment:
Q  305 tgtgttaaaagtcctacatcggttagaagttggcatgacaattt 348  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||    
T  2324439 tgtgttaagagtcccacatcggttagaagttggcctgacaattt 2324482  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 13486300 - 13486344
Alignment:
Q  307 tgttaaaagtcctacatcggttagaagttggcatgacaatttatt 351  Q
    |||||| ||||| ||||||||||| ||||||| ||||||||||||    
T  13486300 tgttaagagtcccacatcggttaggagttggcctgacaatttatt 13486344  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 348
Target Start/End: Original strand, 4828257 - 4828301
Alignment:
Q  305 tgtgttaaa-agtcctacatcggttagaagttggcatgacaattt 348  Q
    ||||||||| ||||| ||||||||||| |||||||||||||||||    
T  4828257 tgtgttaaagagtcccacatcggttaggagttggcatgacaattt 4828301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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